PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05798_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 691aa    MW: 75571.6 Da    PI: 6.7037
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05798_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23.1e-11282338155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Cotton_A_05798_BGI-A2_v1.0 282 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 338
                                 57*******************5444.2455536655.779999**************98 PP
2AP245.91.4e-14383432355
                         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cotton_A_05798_BGI-A2_v1.0 383 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 432
                                 9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-8282338IPR001471AP2/ERF domain
CDDcd000182.24E-19282348No hitNo description
SuperFamilySSF541719.15E-15282348IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.5E-12283347IPR001471AP2/ERF domain
SMARTSM003807.1E-23283352IPR001471AP2/ERF domain
PROSITE profilePS5103217.411283346IPR001471AP2/ERF domain
PRINTSPR003673.6E-6284295IPR001471AP2/ERF domain
CDDcd000184.19E-24381442No hitNo description
SuperFamilySSF541711.24E-17381442IPR016177DNA-binding domain
PROSITE profilePS5103219.203382440IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.4E-18382441IPR001471AP2/ERF domain
SMARTSM003807.1E-33382446IPR001471AP2/ERF domain
PfamPF008472.0E-9383432IPR001471AP2/ERF domain
PRINTSPR003673.6E-6422442IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MASMNNWLAF SLSPQEPVDH HHQSQTTVSR LGFNSDGISG TDVSGECFDL SGDSSVPSLN  60
LPPPFGILEA FNRNSNQPQA SYKKPIFSHF HFHFIFVADW NMKGSELSMV MGGSSCNTQE  120
PKLENFLGNH GCHTMYDTTT GQYPLYTTTT ARTTNGGGDE DNSTNNNTNL THGASNSNTN  180
SGNSIGLSMI KTWLRNQPAP PPTQVETKNN GGGGSGGGGA PQSLSLSMST GGGGGGSGGE  240
SSSSDNKKTP PQPPSTGVEI TQTGTNEAVA RKSIDTFGQR TSIYRGVTRH RWTGRYEAHL  300
WDNSCRREGQ SRKGRQGGYD KEEKAARAYD LAALKYWGTT TTTNFPISNY EKELEEMKHM  360
TRQEYVASLR RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA  420
EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL ESSQLPIGGA AKRLKDVEQA EMAMDMVHRS  480
DGDNINTHLP DGINTYGTSG WPTIAYQQAQ PFSMHYPYGQ RIWCKQEQDS DPDHAFHDLH  540
QLQLGSTHNF FQPSVLHNLM AMESSSMEHS SGSNTNSVIY NNTVSDGAGY GGYAIPLGTV  600
IPTDTNQNQS NDFGDNSNNE VKALGYENVY TSSDPYHSRN MYYLSQQSSS STSQASPCNN  660
WVPTAVPTIA QRSSNMAVCH GTPTFTVWND T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017624365.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A0D2S6H30.0A0A0D2S6H3_GOSRA; Uncharacterized protein
STRINGGorai.004G263900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86552737
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-141AP2 family protein