PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_05732_BGI-A2_v1.0
Common NameF383_00591
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 496aa    MW: 54586.6 Da    PI: 5.4615
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_05732_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind76.54.5e-24251092102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Fl+k+y++++d+++++++sws+ +nsfvv++  efa+++LpkyFkh+nf+SF       gF+kv+ ++         weF+++
  Cotton_A_05732_BGI-A2_v1.0  25 FLSKTYDVVNDPSTDSVVSWSSGNNSFVVWKVPEFARDLLPKYFKHNNFSSF-------GFRKVDPDR---------WEFANE 91 
                                 9**************************************************9.......9*****999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                  F +g+k+ll++i r+k 
  Cotton_A_05732_BGI-A2_v1.0  92 GFLRGQKHLLKTISRRKP 109
                                 ***************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.3E-2715102IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.04E-2520107IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.3E-4621107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-112548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.5E-2025107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.4E-116375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MDSLHDSISA ANAAATANGN TVPPFLSKTY DVVNDPSTDS VVSWSSGNNS FVVWKVPEFA  60
RDLLPKYFKH NNFSSFGFRK VDPDRWEFAN EGFLRGQKHL LKTISRRKPP NVQSNQQPQV  120
QNSSVGACIE VGKFGLEEEV ERLKRDKNVL MQELVRLRQQ QQTTDSQLQT VGQRVQVMEQ  180
RQQQMMSFLA KAMQSPSFLG QLVQQQNESN RRITGANKKR RLPRQDEENL AGENGAVSAK  240
GQIVKFQPSL NEAAKAMLHQ IMKMNTSPRL DPSINNSGSF LIDGVPPSNA PDSRSSSSRI  300
SGVTLSEVQP ASAQSYLQAE SGFPDTCLSA AAHLTSDHTN ADQISRINEH KSQKHGVIPN  360
VSQMQGTMPD GTVGLTDRSL AGSERGSAEY LDPLLDVLDG TMPVETDDFS ADHDMDILLN  420
GSPELPAIND VFWEKFLATS PLTGDTDEIS SSSLENGANL EQQQAPVRQE SGWDGIHHMN  480
HLTEQMGLLS SNGQTR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-201510719129Heat shock factor protein 1
5d5v_B8e-201510719129Heat shock factor protein 1
5d5v_D8e-201510719129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: DNA-binding capacity is reduced by HSBP in vitro. {ECO:0000269|PubMed:20388662}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7024520.0KJ702452.1 Gossypium hirsutum heat shock transcription factor (HSF10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017626616.10.0PREDICTED: heat stress transcription factor A-1e
SwissprotO818211e-156HFA1B_ARATH; Heat stress transcription factor A-1b
TrEMBLA0A0B0NL430.0A0A0B0NL43_GOSAR; Heat stress transcription factor A-1b-like protein
TrEMBLA0A2P5X6P60.0A0A2P5X6P6_GOSBA; Uncharacterized protein
STRINGGorai.004G257000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-131heat shock factor 3
Publications ? help Back to Top
  1. Hsu SF,Jinn TL
    AtHSBP functions in seed development and the motif is required for subcellular localization and interaction with AtHSFs.
    Plant Signal Behav, 2010. 5(8): p. 1042-4
    [PMID:20657173]
  2. Bechtold U, et al.
    Arabidopsis HEAT SHOCK TRANSCRIPTION FACTORA1b overexpression enhances water productivity, resistance to drought, and infection.
    J. Exp. Bot., 2013. 64(11): p. 3467-81
    [PMID:23828547]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]