PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_05723_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 530aa MW: 59569 Da PI: 9.4095

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_05723_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.2	5.3e-12	353	397	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h + Er+RR+++N++f Lr+llP+ +K +Ka++L+ A eY+ sL Cotton_A_05723_BGI-A2_v1.0 353 HMMSERKRREKLNESFVALRSLLPSG-----TKRDKASVLTTAREYLVSL 397 8899*******************8.....8************9777 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.11	348	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.92E-11	348	401	No hit	No description
SuperFamily	SSF47459	9.95E-17	349	417	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.3E-14	352	415	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.6E-9	353	397	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.0E-12	354	403	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MDAIFNLDEA SRAEFLNLLM QSTCCSYICL WSYSFLQQAN CLIGLDGCCS EENSQALGLF 60 LEYKQLIFRL ENDKYGQIYI FFFLGGGGFA FKNNQPYIEL RELELQNRAF HETQRQFYRV 120 IKIKCKFYIT KELTTAVFMA CRSGEIELGS SSMVQLNMEM EMRSFFSEDQ LPQSTNQNRP 180 SSSSSSLRSL STSSPDSSLI FTVPTTHEPA PSSLQQAAIT PSSINDPRRA MQAFSQTRSN 240 IPLPTLESEN AAMTRAILAV LTSPSSSSSS SSTPFHRNQS LPYNNYRLNP KASAFKRYAT 300 GLGAGPATTP ARASLRAQAM MKRAILFYRK FNLARREQLL RSRPGPTSNQ LHHMMSERKR 360 REKLNESFVA LRSLLPSGTK RDKASVLTTA REYLVSLKAQ ILELNRQKQL LEAQILPSKG 420 GAAAIEVNDP SNERVNVRVI PVPESTSEER IADLRVTVRG ERPIVDILIH LLEFLKLDRN 480 VSLMSIEANT GVSEFGSVNL VSLRLRIKGD GWDESTFQEA VRRLITDLAQ

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MDAIFNLDEA SRAEFLNLLM QSTCCSYICL WSYSFLQQAN CLIGLDGCCS EENSQALGLF  60
LEYKQLIFRL ENDKYGQIYI FFFLGGGGFA FKNNQPYIEL RELELQNRAF HETQRQFYRV  120
IKIKCKFYIT KELTTAVFMA CRSGEIELGS SSMVQLNMEM EMRSFFSEDQ LPQSTNQNRP  180
SSSSSSLRSL STSSPDSSLI FTVPTTHEPA PSSLQQAAIT PSSINDPRRA MQAFSQTRSN  240
IPLPTLESEN AAMTRAILAV LTSPSSSSSS SSTPFHRNQS LPYNNYRLNP KASAFKRYAT  300
GLGAGPATTP ARASLRAQAM MKRAILFYRK FNLARREQLL RSRPGPTSNQ LHHMMSERKR  360
REKLNESFVA LRSLLPSGTK RDKASVLTTA REYLVSLKAQ ILELNRQKQL LEAQILPSKG  420
GAAAIEVNDP SNERVNVRVI PVPESTSEER IADLRVTVRG ERPIVDILIH LLEFLKLDRN  480
VSLMSIEANT GVSEFGSVNL VSLRLRIKGD GWDESTFQEA VRRLITDLAQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	356	361	ERKRRE
2	357	362	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016719707.1	0.0	PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBL	A0A1U8LYU2	0.0	A0A1U8LYU2_GOSHI; putative transcription factor bHLH041 isoform X1
STRING	Gorai.001G012400.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7060	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	4e-61	bHLH family protein