PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04582_BGI-A2_v1.0
Common NameF383_10385
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family C3H
Protein Properties Length: 743aa    MW: 81806.2 Da    PI: 5.6791
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04582_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07143165427
                                 ---SGGGGTS--TTTTT-SS-SSS CS
                     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                                 ++C ff++ G C  GdrC F Hgp
  Cotton_A_04582_BGI-A2_v1.0 143 VPCIFFLK-GLCIKGDRCAFLHGP 165
                                 59******.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.8034069IPR000571Zinc finger, CCCH-type
SMARTSM003560.00184168IPR000571Zinc finger, CCCH-type
PfamPF156631.2E-114195No hitNo description
PROSITE profilePS5010310.5127197IPR000571Zinc finger, CCCH-type
SMARTSM003560.0527396IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.061139166IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-4139165IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5140164IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-5143165IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4144165IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MVAATPQQQQ QQQQQKQAAV ATTTVTVAGA TKPSAEEEAL KRNTDCVYFL ASPLTCKKGS  60
ECEYRHSEYA RVNPRDCYYW LNGNCLNPKC GFRHPPLDGL LGTQATTPTG SSKPSSHTAA  120
TTAPASHMPY SQGASYSSGK HAVPCIFFLK GLCIKGDRCA FLHGPTTSNK ATQLAATTTA  180
SEPHLLKKTF GAVEASQSQK FPPTNVSNTV GLAPESKPSA KVKAAFTRSG TGTEKSVPSP  240
VGLDEELPRH KATKTTSVVN GGSMGHSGWL HQPHASDEQT FHGSKDTEEF LRESSPGFDV  300
LVDDELRDSD FYHGEDQYGG TRGHEGRNVN EYDIGRPANY DAMVDVDQEM FHDARGYDSF  360
DNVQGNYDWD QQRASSERMP LGSSTLERRG YSRVDSPDHV EESDLRHRLS KRRRVNGLKS  420
VVSHDNALEN CEGERNYRAG SQRDSHRLPP HERSLGSRLQ GRIKLPGRSV NGSDLHSERE  480
IERGRNWGRH SPGKPQTSSQ GRLRDRIKGK VEGDFNNNEG RNFGGLRIRR EVTDGRNADF  540
AGPKSLAELK VGKNSDNKQH QSLGKRRSVG DHQQIEGDLS FKGPMPLSEI LKRKRQSEGA  600
ASGDGIASVN KEDVDQKQSK GSLISGSNNQ EVSVTVKEAN KDEESKVAAT DIGITEATHG  660
ESSQPLNMSE HEADADAEDG IIGDERIEDH EVEADDQRDG EYYYEQVDEG EYNYEDENVD  720
PEEEYIEEED GDDFAKKLGV MFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1410414KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017637465.10.0PREDICTED: zinc finger CCCH domain-containing protein 17
TrEMBLA0A0B0PBW50.0A0A0B0PBW5_GOSAR; Uncharacterized protein
STRINGGorai.002G167900.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89681215