PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bZIP

Protein Properties

Length: 386aa MW: 41901.6 Da PI: 6.1885

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_04420_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31	5.6e-10	207	265	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l+ l+ +l++e+ Cotton_A_04420_BGI-A2_v1.0 207 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLNAQLSLLQRDTGTLTAEN 265 9***********************************************99888887776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	7.0E-16	203	267	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.001	205	268	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.4E-10	207	261	No hit	No description
Pfam	PF00170	9.6E-9	207	264	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.27E-10	207	261	No hit	No description
CDD	cd14703	9.33E-25	208	257	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MEKDKSPGLP PPSGRYTGFA AVGNVLNSTG CFGQSSDANR FSQDISKMPD NPPKNLGHRR 60 AHSEILTLPD DISFDSDLGV VGAADGPSYS DDTEEDVFSM FIDMDKFNAS SATSTFQVGE 120 SSAPAAAPAT AQVAAAAWTG MNGENQSVTV GSSEKPRVRH QHSQSMDGST SIKPEMLMSG 180 SEEVSPAEAK KALSATKLAE LAIIDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL 240 QTEATSLNAQ LSLLQRDTGT LTAENNELKL RLTTMEQQVH LQDALNEALK DEIQHLKVLT 300 GQSIPNGGPM MNYASYGVNQ QYYPNNQAMH TLLTAQQFQQ LQIQSQKQPH PFQPQHQTGD 360 MGVRGSVPTP NHKDASSDVS LTASKD

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MEKDKSPGLP PPSGRYTGFA AVGNVLNSTG CFGQSSDANR FSQDISKMPD NPPKNLGHRR  60
AHSEILTLPD DISFDSDLGV VGAADGPSYS DDTEEDVFSM FIDMDKFNAS SATSTFQVGE  120
SSAPAAAPAT AQVAAAAWTG MNGENQSVTV GSSEKPRVRH QHSQSMDGST SIKPEMLMSG  180
SEEVSPAEAK KALSATKLAE LAIIDPKRAK RIWANRQSAA RSKERKMRYI AELERKVQTL  240
QTEATSLNAQ LSLLQRDTGT LTAENNELKL RLTTMEQQVH LQDALNEALK DEIQHLKVLT  300
GQSIPNGGPM MNYASYGVNQ QYYPNNQAMH TLLTAQQFQQ LQIQSQKQPH PFQPQHQTGD  360
MGVRGSVPTP NHKDASSDVS LTASKD

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX589764	3e-68	JX589764.1 Gossypium hirsutum clone NBRI_GE24526 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017634110.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-154	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0B0MJN4	0.0	A0A0B0MJN4_GOSAR; Putative transcription factor PosF21-like protein
STRING	Gorai.005G015900.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2445	27	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-158	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]