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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_03492_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
Trihelix |
Protein Properties |
Length: 273aa MW: 32560.6 Da PI: 8.6213 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_03492_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 77.7 | 1.8e-24 | 34 | 116 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
+W+ qe+++ + +r e+++++ ++k++k lWe +s +mre+g++rs++qCk+kw+nl +ryk + + + + +++++p++d
Cotton_A_03492_BGI-A2_v1.0 34 QWSVQETKDFLMIRAELDQSFMETKRNKLLWEVISTRMREKGYNRSAEQCKCKWKNLFTRYKGCGTVDAEI---VRQQFPFYD 113
7********************************************************************97...67789**** PP
trihelix 84 qle 86
+l+
Cotton_A_03492_BGI-A2_v1.0 114 ELQ 116
*98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 273 aa
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to blast |
MEGHHRHHHH QQQQHLQQQQ QPVSVNVEAD RFPQWSVQET KDFLMIRAEL DQSFMETKRN 60 KLLWEVISTR MREKGYNRSA EQCKCKWKNL FTRYKGCGTV DAEIVRQQFP FYDELQAIFT 120 ARMQSVLCSE SEGGGATGSK KKAAQAQLSS DEEDDTEENE YSFRKKKKGK TGGGSSSTSG 180 SINIKEMLAN FMRQQLQMEM QWREALESRE NERRMKEMEW RQTMEALENE RIMMERRWRE 240 REEQRRVREE ARAEKRDALI TALLNKLRRE DQM
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that may play a role in the induction of CAM4 in response to pathogen and salt. {ECO:0000269|PubMed:15310827}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salt and infection with the bacterial pathogen P.syringae pv tomato. {ECO:0000269|PubMed:15310827}. |