PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01739_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 224aa    MW: 25453.3 Da    PI: 8.2197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01739_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.9e-154698155
                                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                                ++ +hn+ Er RR+++Ns f+ Lr+llP a   + kK+s  +++ +Av+YI +Lq
  Cotton_A_01739_BGI-A2_v1.0 46 KKLNHNAGERHRRKEVNSLFSSLRSLLPLA--DQMKKVSIPATVSEAVKYIPELQ 98
                                6789*************************6..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.6844597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.3E-1446111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-1646117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-124698IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-1051103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MCALAPFPTP NWPLLNPIGH QLNYIYENNE TLDSVPQASF DPCVVKKLNH NAGERHRRKE  60
VNSLFSSLRS LLPLADQMKK VSIPATVSEA VKYIPELQEQ VERLVHKKEE LLLRIFQQGG  120
IKRCRDGRCS SSATVSINRL SSDSEVVIQI TLRKDRVQKI QLSEFLHILE EQQGLILLNA  180
TSFESFGAGM IFYNIHLQVE PKTTYQLRES DIEALRGKLL ALCN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5827967e-71JX582796.1 Gossypium hirsutum clone NBRI_GE15694 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609573.11e-166PREDICTED: transcription factor ORG2-like
TrEMBLA0A2P5W7M21e-162A0A2P5W7M2_GOSBA; Uncharacterized protein
STRINGGorai.006G120300.11e-144(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.14e-35bHLH family protein