PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cotton_A_01675_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

Dof

Protein Properties

Length: 248aa MW: 25615.4 Da PI: 8.7462

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_01675_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.9	2.1e-38	24	84	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l cprCdstntkfCyynny+ sqPryfCk+CrryWt+GG+lr++PvGgg+rkn k+s Cotton_A_01675_BGI-A2_v1.0 24 EQEQLLCPRCDSTNTKFCYYNNYNFSQPRYFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRS 84 578899***************************************************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	21	82	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.7E-33	26	82	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	28	82	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	30	66	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MPSSSADQCR RFNKGLNNGA PPPEQEQLLC PRCDSTNTKF CYYNNYNFSQ PRYFCKSCRR 60 YWTHGGTLRD IPVGGGTRKN AKRSRSNIGT TTTFSTTNAA PSAAATTTTA TTTSYNSFPL 120 PATPVLLPIS SNQGSFSIGG ESKGSNIFGS FTSLLNTQGP GFLALGGFGL GIAPSLDDVG 180 FGLGRGMWPL PCVGDGGAAG GGGGRGNGGA ATGMGNAWQF EGAETGFVGG DCFSWPDLAI 240 STPANGVK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX616606	0.0	JX616606.1 Gossypium hirsutum clone NBRI_GE61393 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017643802.1	1e-179	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	2e-60	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	A0A2P5W0G8	1e-178	A0A2P5W0G8_GOSBA; Uncharacterized protein
STRING	Gorai.003G021000.1	1e-138	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-56	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]