PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01671_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13235.2 Da PI: 9.6611 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.1 | 9.1e-15 | 27 | 112 | 7 | 97 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH.HT--TT-EEEEEE-SSS CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka.ngLkegDfvvFkldgrs 88 d+ +g l +p+kf+++hg+ ++ l+ +sg++W+ +l +k++g++ +++GW eF++ L+ g +vF++d++s Cotton_A_01671_BGI-A2_v1.0 27 LLDTILNGKLGIPRKFVKNHGNGMSSP--ALLQVPSGEVWKAEL--TKSDGKICFENGWLEFANHyYSLELGHLLVFRYDRNS 105 467888999***********7665455..9999***********..*****************98359************999 PP EE..EEEEE CS B3 89 efelvvkvf 97 +f +v +f Cotton_A_01671_BGI-A2_v1.0 106 NF--HVIIF 112 99..88777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.0E-21 | 17 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-22 | 18 | 114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.96E-18 | 20 | 112 | No hit | No description |
PROSITE profile | PS50863 | 10.334 | 21 | 115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.5E-15 | 22 | 115 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.9E-12 | 27 | 112 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MATSSHQQGN GHLKYISNSP YFFKIILLDT ILNGKLGIPR KFVKNHGNGM SSPALLQVPS 60 GEVWKAELTK SDGKICFENG WLEFANHYYS LELGHLLVFR YDRNSNFHVI IFYRSA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX587179 | 1e-64 | JX587179.1 Gossypium hirsutum clone NBRI_GE21198 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012472263.1 | 2e-61 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_016690612.1 | 7e-62 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
Refseq | XP_017644895.1 | 3e-60 | PREDICTED: B3 domain-containing transcription factor VRN1-like | ||||
TrEMBL | A0A0D2QM03 | 5e-61 | A0A0D2QM03_GOSRA; Uncharacterized protein | ||||
STRING | Gorai.003G020800.1 | 8e-62 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14219 | 7 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 5e-23 | B3 family protein |