PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01669_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 244aa    MW: 27432.2 Da    PI: 10.1317
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01669_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.9e-181292051187
                                 HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                          B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                                 ++ +rl+++ kf+++h +k+++s  +t  ++sg++W v++++  ++k++  vl++GW  Fv++n++++gD++ F+l+++
  Cotton_A_01669_BGI-A2_v1.0 129 SRGCRLTISAKFVRKHLMKEHCS--MTRCNSSGKTWIVTFKHnqTGKKQISVLRAGWGTFVRDNNIQAGDVCAFELINS 205
                                 455*************8898897..6666*******99998854555555*************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-23108215IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-23109217IPR015300DNA-binding pseudobarrel domain
CDDcd100172.04E-20113215No hitNo description
SMARTSM010191.4E-10115218IPR003340B3 DNA binding domain
PROSITE profilePS5086311.744119218IPR003340B3 DNA binding domain
PfamPF023626.9E-15129207IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MSSPASSGSH LVQYDGNSNF HVIIFDRTAS EIQYPYTSNN QRQSNEIPKQ NINESKTECN  60
GKSGFLAQQV SHNGCPAVKG DKRTNHPVIQ RMKGREKVKT LEKAINTFKS KNPFFLVVMQ  120
PYYVGLGHSR GCRLTISAKF VRKHLMKEHC SMTRCNSSGK TWIVTFKHNQ TGKKQISVLR  180
AGWGTFVRDN NIQAGDVCAF ELINSIQISF KVVIYECQHT NCHQSFASTD VFRSVKGEAL  240
SYAS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012469505.18e-98PREDICTED: B3 domain-containing transcription factor VRN1-like isoform X2
RefseqXP_016692312.11e-97PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2NV504e-97A0A0D2NV50_GOSRA; Uncharacterized protein
TrEMBLA0A1U8JPW13e-96A0A1U8JPW1_GOSHI; B3 domain-containing transcription factor VRN1-like
STRINGGorai.003G020000.18e-97(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein