PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01668_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family B3
Protein Properties Length: 526aa    MW: 59882.1 Da    PI: 8.5042
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01668_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.68.1e-126643799
                                EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                          B3 37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                                +l  +sg++W+v+l  +k+ g++++++GW eF +   L+ g  +vF++dg+s+f  +v +f++
  Cotton_A_01668_BGI-A2_v1.0  6 MLSVPSGEVWKVEL--TKCNGKIWFENGWLEFSNHYSLEFGHLLVFRYDGNSNF--HVVIFDR 64
                                67789*********..**********************************9999..**99997 PP
2B357.62.3e-18191289296
                                 EEE-..-HHHHT....T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT CS
                          B3   2 fkvltpsdvlks....grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkeg 77 
                                 + v+ ps+v+ s     rl +p +f+++h +++ +s  +tl ++sg++W v+++     kk+ +y+lt GW  Fv++n++++g
  Cotton_A_01668_BGI-A2_v1.0 191 LVVMQPSYVGLShskgYRLAIPANFVRKHLMEELCS--ITLCNSSGKTWIVTFKNnqiGKKRTSYLLT-GWGTFVHDNNIRVG 270
                                 5566666666554555899**********8787776..9999***********777656666668888.************** PP

                                 -EEEEEE-SSSEE..EEEE CS
                          B3  78 DfvvFkldgrsefelvvkv 96 
                                 D + F+l+++ e++++v +
  Cotton_A_01668_BGI-A2_v1.0 271 DACAFELINSIEKSFNVVI 289
                                 *******987444456555 PP
3B356.16.6e-18351444499
                                 E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE..EEE-TTHHHHHHHHT--TT-EEE CS
                          B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr..yvltkGWkeFvkangLkegDfvv 81 
                                 vl ps++   +r+ +p  fa+++  k   +k+ +l  ++g+sW v ++    + +  +   ++++GW++F ++n+L++gD++v
  Cotton_A_01668_BGI-A2_v1.0 351 VLQPSYS---RRMNIPVIFARKYLAK--MHKEAILLLSNGKSWPVIYCQhkiEST--GanAIFGSGWRRFSHDNKLEVGDSCV 426
                                 4433333...4578*********545..3457899999*********76543333..3569********************** PP

                                 EEE-SSSEE..EEEEE-S CS
                          B3  82 Fkldgrsefelvvkvfrk 99 
                                 F+l+   e++++v++++k
  Cotton_A_01668_BGI-A2_v1.0 427 FELIMAAETSMKVTIYKK 444
                                 ****88889899999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.929165IPR003340B3 DNA binding domain
SMARTSM010190.066165IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-15564IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.0E-14665IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-9664IPR003340B3 DNA binding domain
CDDcd100171.43E-11763No hitNo description
Gene3DG3DSA:2.40.330.103.7E-23182290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.29E-23185292IPR015300DNA-binding pseudobarrel domain
CDDcd100177.90E-21188290No hitNo description
SMARTSM010191.6E-15190293IPR003340B3 DNA binding domain
PROSITE profilePS5086313.704194293IPR003340B3 DNA binding domain
PfamPF023629.0E-16202289IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.2E-24339445IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-22341444IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.916345445IPR003340B3 DNA binding domain
CDDcd100171.45E-20346443No hitNo description
SMARTSM010198.2E-17347445IPR003340B3 DNA binding domain
PfamPF023622.3E-16351444IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSSPAMLSVP SGEVWKVELT KCNGKIWFEN GWLEFSNHYS LEFGHLLVFR YDGNSNFHVV  60
IFDRTATEIL YPYTRYNHIH RRSNIDKSKD DDSTQNLEDI STSRKLREKS QMPCPQPCKM  120
MHSTNSAIKT EIECNGKSEF LAQQIRYEGC PARNDDKSTR HRIIQQLKPH EKDDALERAS  180
KTFKSENPFF LVVMQPSYVG LSHSKGYRLA IPANFVRKHL MEELCSITLC NSSGKTWIVT  240
FKNNQIGKKR TSYLLTGWGT FVHDNNIRVG DACAFELINS IEKSFNVVIY QGPHTKCYQS  300
LSSTDIIRPM KRKDQSYASP SGSETLTALE KAKAFQVASA FKSEYPFFIS VLQPSYSRRM  360
NIPVIFARKY LAKMHKEAIL LLSNGKSWPV IYCQHKIEST GANAIFGSGW RRFSHDNKLE  420
VGDSCVFELI MAAETSMKVT IYKKQAVKDS SLADNSREKQ VELHESSVIG TKSALMNEKE  480
DMFNLLLDYN CDASGETLDD ILMSNISSPG KALEEASQSY QSFTRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-1531744317141B3 domain-containing transcription factor VRN1
4i1k_B5e-1531744317141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5782021e-125JX578202.1 Gossypium hirsutum clone NBRI_GE10175 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644895.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0D2MI580.0A0A0D2MI58_GOSRA; Uncharacterized protein
STRINGGorai.003G020000.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14219723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.11e-33B3 family protein