PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01612_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 85aa MW: 9568.76 Da PI: 7.512 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 14 | 59 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 ++W++e +l+ +a + + ++ +W Ia+ +g + t+ ++k + Cotton_A_01612_BGI-A2_v1.0 14 LNWSAEKNKLFENALAIHDKDvpqRWQQIAKLVGGTTTEQEVKKQY 59 69********************************777888888765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 7.61E-5 | 15 | 63 | No hit | No description |
PROSITE profile | PS50090 | 6.017 | 15 | 63 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.06E-9 | 15 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
MGSGHFSSSC SYNLNWSAEK NKLFENALAI HDKDVPQRWQ QIAKLVGGTT TEQEVKKQYE 60 ILLDDIKRIE SGKVPLPEYT TNGGK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 9e-26 | 16 | 84 | 11 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017969656.1 | 7e-37 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | Q58FS3 | 1e-25 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2P5XBG5 | 1e-54 | A0A2P5XBG5_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G014600.1 | 4e-54 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-27 | RAD-like 1 |
Publications ? help Back to Top | |||
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