PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01283_BGI-A2_v1.0 | ||||||||
Common Name | F383_03684 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 307aa MW: 33887.4 Da PI: 9.8689 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.7 | 2.4e-12 | 57 | 101 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Cotton_A_01283_BGI-A2_v1.0 57 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 101 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.99E-16 | 51 | 107 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 52 | 106 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-6 | 55 | 107 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.4E-18 | 55 | 104 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 6.5E-10 | 56 | 104 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-10 | 57 | 101 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-7 | 59 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MVSKNPNPAE GFYLDPTGMA LPGLGPFAAT DAAASTVSSS EDPNKKIRKP YTITKSRESW 60 TEPEHDKFLE ALQLFDRDWK KIEAFVGSKT VIQIRSHAQK YFLKVQKNGT NEHLPPPRPK 120 RKAAHPYPQK ASKNVHVQPQ ASGSLQSSNA LVDTGCVLRS DPSLMLMNPV TAASSWTHNE 180 QTISFSQAKK GSGMANKSRG SSMSTPQRRQ IGEMTNQGNH GHALRVLPDF VQVYSFIGSV 240 FDPNTTGHLQ KLKKMDPIDI ETVLLLMRNL SINLTSPDFE DHRKLLSSYE IDTETIYHGG 300 ACKAVGT |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00560 | DAP | Transfer from AT5G52660 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017634602.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634603.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634604.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634605.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Refseq | XP_017634606.1 | 0.0 | PREDICTED: protein REVEILLE 6 isoform X1 | ||||
Swissprot | Q8H0W3 | 1e-136 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | A0A0B0P468 | 0.0 | A0A0B0P468_GOSAR; Transcription factor ASG4-like protein | ||||
STRING | Gorai.008G274500.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1290 | 28 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 1e-122 | MYB_related family protein |
Publications ? help Back to Top | |||
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