PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01066_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 263aa    MW: 29637.7 Da    PI: 6.1543
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01066_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH469.7e-1571123155
                                 CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                         HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 ++ +hn+ Er RR+++N+ ++ Lr+llP a   + kKls  +++ +A +YI +Lq
  Cotton_A_01066_BGI-A2_v1.0  71 KKLNHNASERDRRKKVNNMYSSLRSLLPVA--DQTKKLSFPATVSHALKYIPELQ 123
                                 6789*************************6..48888***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.94870122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-1271123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1771142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-1271127No hitNo description
Gene3DG3DSA:4.10.280.109.1E-1471137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-1176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MCALAPFPTP NWPLVNPIGY EHNYMMYEGG SECLESFLQF PPSPQEGIPL ESLSPTSNFT  60
QTSNSDPCIV KKLNHNASER DRRKKVNNMY SSLRSLLPVA DQTKKLSFPA TVSHALKYIP  120
ELQQQVERLV QKKEELLLRI SEQGGVKPCE EKEEARKRNN RKQGSCLGGV GVSINRSSDG  180
EVAIQISIRE VDKRSGLLSE MLQYLEQQGF LVLNASSFES FGGVVFYNIH LQMELETSRK  240
MGSEEALSER IFALCYNREE LGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5883333e-58JX588333.1 Gossypium hirsutum clone NBRI_GE22730 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628614.10.0PREDICTED: transcription factor ORG2-like
TrEMBLA0A1U8PPB20.0A0A1U8PPB2_GOSHI; transcription factor ORG2-like
STRINGGorai.009G073100.11e-173(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-50bHLH family protein