PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_00913_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 219aa MW: 24172.9 Da PI: 5.1757 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.3 | 1.2e-20 | 72 | 122 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr++ +g+WvAeIr+p+ k kr +lg+f ta++Aa a+++a+k ++ge Cotton_A_00913_BGI-A2_v1.0 72 IYRGVRQRT-WGKWVAEIRVPN---KGKRLWLGTFPTAFQAALAYDEAAKTMYGE 122 6*****999.**********93...25*************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.95E-29 | 71 | 131 | No hit | No description |
Pfam | PF00847 | 1.0E-14 | 71 | 122 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-34 | 72 | 135 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-20 | 72 | 131 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.391 | 72 | 129 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 73 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-30 | 73 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-9 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MGFSENQNPN VGIPLFSDSS RKRKRRNGLS VADTLKQWSE NSDTKKALKP PAKGSKKGCM 60 KGKGGPQNQD CIYRGVRQRT WGKWVAEIRV PNKGKRLWLG TFPTAFQAAL AYDEAAKTMY 120 GEKAILNMPH SSDPTTTTSA CSESTTATAS DVNAEVREEA KVAAEEDESM NEMDYSWLNG 180 LEFKDDIALN CGGNNNISVW DGGWLFNEDE CFSIDELLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 73 | 129 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 1e-17 | 73 | 130 | 15 | 73 | Ethylene-responsive transcription factor ERF096 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 20 | 25 | RKRKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017618872.1 | 1e-163 | PREDICTED: dehydration-responsive element-binding protein 2A-like | ||||
Swissprot | Q8LFR2 | 5e-46 | DRE2C_ARATH; Dehydration-responsive element-binding protein 2C | ||||
TrEMBL | A0A1U8MSC0 | 1e-161 | A0A1U8MSC0_GOSHI; dehydration-responsive element-binding protein 2A-like | ||||
TrEMBL | A0A2P5W9M4 | 1e-161 | A0A2P5W9M4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.013G025100.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8532 | 25 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G05410.2 | 1e-35 | DRE-binding protein 2A |
Publications ? help Back to Top | |||
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