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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_00229_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
DBB |
Protein Properties |
Length: 200aa MW: 22139.9 Da PI: 4.9364 |
Description |
DBB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_00229_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 18.7 | 3.5e-06 | 5 | 35 | 6 | 36 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg 36
C+ ++++e++ fC ++ lC C + H+
Cotton_A_00229_BGI-A2_v1.0 5 CEVCDKEEATVFCPADEAALCGVCDHNVHHA 35
***************************9743 PP
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2 | zf-B_box | 31.9 | 2.6e-10 | 52 | 91 | 2 | 39 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg..Htv 39
e + C+ ++ek++ lfC++++ lC++C +Hk Ht+
Cotton_A_00229_BGI-A2_v1.0 52 ESPLCDICQEKRALLFCQEDRAILCRECDIPIHKAneHTT 91
6789*****************************8889987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010200 | Biological Process | response to chitin |
GO:0080167 | Biological Process | response to karrikin |
GO:1900458 | Biological Process | negative regulation of brassinosteroid mediated signaling pathway |
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
GO:0005622 | Cellular Component | intracellular |
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 200 aa
Download sequence Send
to blast |
MKIWCEVCDK EEATVFCPAD EAALCGVCDH NVHHANKLAT KHCRFALLQP DESPLCDICQ 60 EKRALLFCQE DRAILCRECD IPIHKANEHT TKHNRFLLTG VKLSSSSSCS SATGFPPALN 120 TVSSSSNGGY GGQTICSEAE TTSQSNKEIE KPLTTYRIEH NYTIGDDDVL VSMSISEYLM 180 ETLPGWRVDD FLEPSSYAAR
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | JX615304 | 1e-169 | JX615304.1 Gossypium hirsutum clone NBRI_GE59224 microsatellite sequence. |