PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla022901

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

C2H2

Protein Properties

Length: 311aa MW: 33483.1 Da PI: 6.9096

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla022901	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	115	137	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ Fs++ L H++ H Cla022901 115 FSCNFCKREFSTSQALGGHQNAH 137 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.63E-6	112	142	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.8E-4	113	141	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.531	115	142	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	117	137	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MAETGKDNQN CPSEASSISA TSDSGSGRPV TMKMEMVVAD EIDSGDPQSQ ESNSRLLLDL 60 KLSNDENSGN GTPEILNSKR IVPAAAVAVA VTVDSSSSQG HTNNDLCSNS KSRVFSCNFC 120 KREFSTSQAL GGHQNAHKQE RAMAKRRQGM ELGSGASVSG PPYLASYYSP YSALSPHSLY 180 GSSLGKSLGI RMDSMIHKPS YRWLGSPALQ FHGGVDGGWA SRAVVVNSHN NNNNNNNNSK 240 LLAFERLKME GIQAHNGGFR LSTAINAAES MRRFEEDGTI SIPSLNRSDP PVLKMDHHVE 300 ESHELDLSLK L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023549223.1	1e-168	zinc finger protein 3-like
TrEMBL	A0A1S3BGD7	1e-142	A0A1S3BGD7_CUCME; zinc finger protein 1-like
STRING	XP_008446993.1	1e-143	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1822	30	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G01860.1	3e-18	C2H2 family protein