PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022583
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 373aa    MW: 41443.4 Da    PI: 7.713
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022583genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.47.1e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++f+v+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+ll++i+
     Cla022583  25 FLSKTYQLVDDPSTDHIVSWGEDDTTFIVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFRKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Cla022583 113 RRKTA 117
                   **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.5E-3816109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.4E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.07E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.9E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.0E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MSVMLDNCEG ILLSLESHKS VPAPFLSKTY QLVDDPSTDH IVSWGEDDTT FIVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF RKGEKHLLCE IHRRKTAQPQ  120
LPYSHHHLGN LNGPSFFPFS TRVSISPSDS DEQINWCDSP PAPPRAAAAS GYSVLGSGII  180
SNSSSTSNYN MMSSVTALSE DNERLRRNNS MLISELTHMR KLYNDIIYFV QNHVKPVSPS  240
NSFPSLLLCH PSSTTPNSQK PLNHFLGFYP PNTTTATNHF SVPGAIATAH FVSSPTATSK  300
SAVTELDVGE ADNNSCKTKL FGVAISSSKK RLHPDTTNYV SISSNVSDTN KNSRLVLEKG  360
DNLGLNLMPP STS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A8e-22211167112Heat shock factor protein 1
5hdn_A8e-22211167112Heat shock factor protein 1
5hdn_B8e-22211167112Heat shock factor protein 1
5hdn_C8e-22211167112Heat shock factor protein 1
5hdn_D8e-22211167112Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008444610.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-113HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A1S3BAP20.0A0A1S3BAP2_CUCME; heat stress transcription factor B-4
STRINGXP_008444610.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-108heat shock transcription factor B4