PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla021871

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

bZIP

Protein Properties

Length: 319aa MW: 34579.4 Da PI: 5.839

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla021871	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.7	7e-10	222	270	5	53
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ Cla021871 222 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSTQLTLLQ 270 9*****************************************9998886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	6.1E-15	218	282	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.737	220	283	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.4E-9	222	270	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	9.3E-9	222	273	No hit	No description
SuperFamily	SSF57959	8.44E-11	222	272	No hit	No description
CDD	cd14703	2.66E-24	223	272	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MDKEKPQCHG GGFLHQSSRY SGFSSAETSF NGKSEATSSS MSFPPLAPST NSDWAQSGRG 60 MSTDSARFSH DISRMPENPR RNVGHRRAHS EILTLPDDIC FDSDLGIIGG ADGPSLSDDT 120 EEDLLSMYLD MDKFNSSTAT SATQVGDSSS PLVEAAATST DDIAVGLKER PRVRHQHSQS 180 MDGLTNIKPE MLVSGSDEAS AADTKKAMSA AKLAELALID PKRAKRIWAN RQSAARSKER 240 KMRYIAELER KVQTLQTEAT SLSTQLTLLQ RDANGITAEN SELKLRLQTM EQQVHLQDGA 300 FTVSGPSGLG TGMIQLDMH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681848	0.0	LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBank	LN713260	0.0	LN713260.1 Cucumis melo genomic chromosome, chr_6.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008439065.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439066.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439067.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439068.1	0.0	PREDICTED: probable transcription factor PosF21
Refseq	XP_008439069.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-115	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A1S3AYI7	0.0	A0A1S3AYI7_CUCME; probable transcription factor PosF21
STRING	XP_008439065.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-119	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]