PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021694
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family SBP
Protein Properties Length: 801aa    MW: 89637.4 Da    PI: 6.9453
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021694genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP116.71.2e-36136212177
                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                +Cqv+gCe+d+se+k yhrrh+vC  +++a++v+++++++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k 
  Cla021694 136 RCQVPGCEVDISELKGYHRRHRVCLRCANATAVVIDEETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 212
                6************************************************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.5E-27133198IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.248134211IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.96E-33135215IPR004333Transcription factor, SBP-box
PfamPF031106.4E-27137211IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 801 aa     Download sequence    Send to blast
MENSPPSPLP HPLHDGSHRA DAEMDLQLPM ADDSSTALWD LGDLLDFAAD DQFSFSLEQD  60
NLPSASSHHL EIQSQTAPSN SDRIRKRDPR LTCSNFLAGR VPCACPEIDA MLEEEAAAAP  120
GKKRARTARV AAGTVRCQVP GCEVDISELK GYHRRHRVCL RCANATAVVI DEETKRYCQQ  180
CGKFHVLSDF DEGKRSCRRK LERHNNRRRR KPVDSTISME SDQSSMQLED ISCDGDVGKD  240
NILFNNQADQ KEVVHLESED GLVTSTICSA PDLQNNVDSG LTLVAMGEAQ VDGGKDNSKS  300
LTSSYCDNKS TYSSMCPTGR ISFKLYDWNP AEFPRRLRLQ IFEWLANMPV ELEGYIRPGC  360
IILTAFVAMP KFMWIKLLED PTTHVHNFVV ARGRPLWGRG SMLVYLNNMI FRAVEGESVM  420
KIEMDMQAPR LHYVHPTCFE AGKPMEIVAC GSHLRQPKFR SLVSFAGKYL AHDHSFVLPH  480
CQKEGDAKWS DHQLLKICIP HTEYDLFGPA FVEVENQSGL SNFIPILIGD SVTCSEMKAI  540
QERLDMSLLV EATGSSHDTC EHSSLRQKVY SELMMDISWL LRKPSSEPVQ QILNSSQIQR  600
FTRLLKFLIC NDSTVILGRV IEHLTIVMDN VESNAAVNSF SYPDLRFFEK YLDYARDVLQ  660
LNLRKTGNSV LHLGFLKPKG GHVSQSCSEN KLVSAVPGTV LKMESRESGN FQAVTGSTSI  720
GSVEMETIPL INLKLGKKRT VQEHSRKSCS LLFSGAHFRR QTTLFAVTFV AVCFGICAAL  780
VHSHKVGEFA ISIRRCLIDK L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A4e-41134215384squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1197209RRKLERHNNRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818480.0LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651015.10.0PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A1S3AX800.0A0A1S3AX80_CUCME; squamosa promoter-binding-like protein 7
STRINGXP_008438777.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF64703450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.10.0squamosa promoter binding protein-like 7