PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla021552
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 192aa    MW: 21360.9 Da    PI: 8.9406
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla021552genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.54.9e-055880123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               y+C+ C++ F++   L  H+++H
  Cla021552 58 YTCNFCKREFRSAQALGGHMNVH 80
               9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.47E-75585No hitNo description
Gene3DG3DSA:3.30.160.606.4E-45682IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00455880IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195885IPR007087Zinc finger, C2H2
PfamPF139122.0E-65881IPR007087Zinc finger, C2H2
PROSITE patternPS0002806080IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MERNCLRTVY RTSLTTMNAT IGGGASPANT AVKSQRNKLC RAAEEDFING ISWPPRSYTC  60
NFCKREFRSA QALGGHMNVH RRDRALLYSP PADGQFTNLN LNLHHNPNPN IPSHDDVAFV  120
GRKASDLKSS TTMAAEIAKP NMFDRAHWKE GEKFNIGLDI EISTTNNTTS STNVLTDSKK  180
DIDLELRLGY ST
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-145380229superman protein
2l1o_A1e-145380229Transcriptional regulator SUPERMAN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004134421.11e-103PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A0A0L9Y81e-102A0A0A0L9Y8_CUCSA; Uncharacterized protein
STRINGXP_004134421.11e-103(Cucumis sativus)
STRINGXP_004171310.11e-103(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-22C2H2 family protein