PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla021305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | LBD | ||||||||
Protein Properties | Length: 180aa MW: 19749.9 Da PI: 9.2283 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.7 | 2.2e-39 | 18 | 118 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +C aCk+lrrkC ++C++apyf +eq + +fa+vhk+FGasnv+k+l ++pe++r da+ +++yeA+ar+r+Pv G+v++i++lqqq ++l++e+++l++ Cla021305 18 PCGACKFLRRKCMPECIFAPYFDSEQgTTHFAAVHKVFGASNVSKMLLHIPEHKRLDAAITICYEAQARVREPVFGCVAHIFALQQQAARLQVEISYLQA 117 7***********************9988********************************************************************9998 PP DUF260 100 e 100 + Cla021305 118 H 118 6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.942 | 17 | 119 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.0E-38 | 18 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MSSRRSRGSC PEGKGGGPCG ACKFLRRKCM PECIFAPYFD SEQGTTHFAA VHKVFGASNV 60 SKMLLHIPEH KRLDAAITIC YEAQARVREP VFGCVAHIFA LQQQAARLQV EISYLQAHLA 120 TSELPRPAPN LQAQPPALVK KPTLSSIIFL DFSIPSSKLH GRSCNLPWNC PKLEATVSHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-36 | 16 | 119 | 9 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-36 | 16 | 119 | 9 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681848 | 1e-113 | LN681848.1 Cucumis melo genomic scaffold, anchoredscaffold00006. | |||
GenBank | LN713260 | 1e-113 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008438149.1 | 8e-91 | PREDICTED: LOB domain-containing protein 18 | ||||
Swissprot | O22131 | 4e-57 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A1S3AVS3 | 2e-89 | A0A1S3AVS3_CUCME; LOB domain-containing protein 18 | ||||
STRING | XP_008438149.1 | 3e-90 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 8e-59 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
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