PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla020530
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 330aa    MW: 36709 Da    PI: 7.6342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla020530genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.00043218240123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C +Cg  F++   L  H+r+H
  Cla020530 218 HECAICGAEFTSGQALGGHMRRH 240
                78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139129.3E-13145170IPR007087Zinc finger, C2H2
SMARTSM003550.8146168IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.076146173IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-7146168No hitNo description
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
SuperFamilySSF576672.49E-7213240No hitNo description
PfamPF139126.2E-12217242IPR007087Zinc finger, C2H2
SMARTSM003550.056218240IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515218240IPR007087Zinc finger, C2H2
PROSITE patternPS000280220240IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MGSREQALIA KGKRTKRQRL HSPIPFAVQA NSSSGELGGF VVVDDSNFVA ENNDYDDHVV  60
VQNQINNTNF SPSSSSAELQ QFSTTTEEEE DMANCLILLA QGRPPLSPPP KQVDTGPFHH  120
LNNVRRFPAE NVAVGNEKGG AGCYAYECKT CYRTFPSFQA LGGHRASHKK PKAMEAEKKL  180
LLSSDDEEIQ FKNNITHSLS LQLNQRGSLH SSGKAKVHEC AICGAEFTSG QALGGHMRRH  240
RAMPVGTNTA LSLTPMNMEA EEQRQPKRQR SMLSLDLDLN LPAPQEHDQR ESKFLIKSNQ  300
QQQQPQQQQH NKQQQQPLVF PATTLVDCHY
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00487DAPTransfer from AT5G04390Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818961e-178LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBankLN7132641e-178LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022981823.10.0zinc finger protein ZAT5
TrEMBLA0A1S3BFZ91e-164A0A1S3BFZ9_CUCME; zinc finger protein ZAT5-like
STRINGXP_008446814.11e-165(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.16e-64C2H2 family protein