PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla020215 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 208aa MW: 23488.2 Da PI: 9.9653 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69.9 | 2.3e-22 | 15 | 61 | 3 | 49 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 e ks++qvtfskRr+g++ KA ELS+LC+ae+ +++fss+gk+y++ Cla020215 15 LEVKSRQQVTFSKRRAGLFNKAAELSILCGAEIGILVFSSSGKIYTF 61 5779******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 26.689 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.1E-30 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-25 | 5 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.68E-34 | 6 | 77 | No hit | No description |
PRINTS | PR00404 | 6.8E-21 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-22 | 16 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-21 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.8E-21 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MKKSLGRQKI EIKKLEVKSR QQVTFSKRRA GLFNKAAELS ILCGAEIGIL VFSSSGKIYT 60 FGHPNVDSLL DRFLTANFAP PKPPEAYLPL AELNRDFENA TVEFEFEKRR AAEVEERMRN 120 SRRFWWDEPM ECMGIEDLKR FRSSLLELRG KVAERVEKLA AVRNRGLLMP AASFHLAGNL 180 QYAPLPSFHL AGSNSVATEI EGLGLGFL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004149713.1 | 9e-97 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A0A0LLS2 | 2e-95 | A0A0A0LLS2_CUCSA; Mads box protein | ||||
STRING | XP_004163280.1 | 3e-96 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF128 | 33 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-36 | AGAMOUS-like 62 |