PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Cla020050

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

TCP

Protein Properties

Length: 257aa MW: 26673.7 Da PI: 10.5046

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla020050	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.7e-38	34	127	3	93
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg....kaaks 93 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++a+++ ++s s+ ++ s++ ++ +s Cla020050 34 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFS-SVSLSVRGNGGSASlsspSSTTS 127 79******************************************************************888.33333333322222322222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	3.3E-34	39	126	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.209	39	93	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MSNSDHTTNA NGVSNAAAIE THKNQPSSNG ALVVKKPPSK DRHSKVDGRG RRIRMPIICA 60 ARVFQLTREL GHKSDGQTIE WLLRQAEPSI IAATGTGTTP ANFSSVSLSV RGNGGSASLS 120 SPSSTTSTLS LSRPQALSGP TPFILGKRVR SDDDGKDDGL GVGQAVGSIV GPTGPGGYWA 180 IPARPDYGQV WSFAAAAPSE MVVQPGGISQ QASLFAQQQQ PIREASAARV GNYLPGHLNL 240 LASLSGGGSG RREDDPR

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	0.0	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	0.0	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008445886.1	1e-149	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	9e-90	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A1S3BDR1	1e-148	A0A1S3BDR1_CUCME; transcription factor TCP7-like
STRING	XP_008445886.1	1e-149	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	3e-62	TCP family protein