PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019998
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 710aa    MW: 76077 Da    PI: 6.3596
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019998genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.73.2e-16473519455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 hn  ErrRRdriN+++  L+el+P++      K++Ka++L +A+eY+k Lq
  Cla019998 473 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 519
                6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.45E-17465523No hitNo description
SuperFamilySSF474591.44E-20466529IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.349469518IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-20473527IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-13473519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-17475524IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009704Biological Processde-etiolation
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0031539Biological Processpositive regulation of anthocyanin metabolic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 710 aa     Download sequence    Send to blast
MPLSELYRVA RGKLDSTQDK NNMVASDLSM NPENDVFELV WENGQILLQG QSNRTRKLNT  60
SQAQCLPSHS PRDRDRDVGY FNNAKMVKFG AIDSVVRDVM STAPSPDVEL AHDDDDDMVP  120
WLSYPLDGHL QHDYSSDFLP ELSGVTVNDF SSRNSIASSI GKASGGNQVN REKDMHLNSL  180
HGANLEDGNN SKLSSLDVST TRPRSSMNQL HSSASQQIQT SFPHLRTKCT GGTESTTDKI  240
LHDSLVGHSP QVPSIASSSS STAKQKLDPT PPSNSSNVIN FSHFLRPAAL LKSSPQNHGV  300
PGTGGSRNLD SVVKNCSAVN KQTHESSLIV TRGGIRNESN SCCKNAVVPS IDGKNPSDGK  360
PPEQSQANKQ PEVACLGDSA DHDDRLKHCL EVGATKGLPD SEKGVESIIA ASVCSRNSVE  420
GASDDLPPNR KRKCHDTEDS EWHSDDVEEE CNDVKRVTSA RGTGSKRSRA AEVHNLSERR  480
RRDRINEKMR ALQELIPNCN KVDKASMLDE AIEYLKTLQL QVQIMSMGAG LFMPPVMFPG  540
GMPPMNAPHI YPPMGIGMGM GMGFGIGMPD MNGGSPGFPM VQVPHMQGMH FPGPSIPAQT  600
VMHGLPSSNF QVLGLPGQGL PMPMPRGPIA PFSGGPFMTN SSVAAAPVEN FGSAAASTSK  660
DASPNINSPM VPNGGTDPSI TPALRQANEQ ASCVNDSGVN PTTKNDLIAN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477482ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00081ChIP-seqTransfer from AT1G09530Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008453043.10.0PREDICTED: transcription factor PIF3 isoform X1
TrEMBLA0A1S3BWE90.0A0A1S3BWE9_CUCME; transcription factor PIF3 isoform X1
STRINGXP_008453043.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52713353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-60phytochrome interacting factor 3