PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019871
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 315aa    MW: 35488 Da    PI: 5.2717
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019871genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.3e-13117168155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Cla019871 117 QRMTHIAVERNRRKQMNEYLSVLRSLMPES---YVQRGDQASIIGGAINFVKELE 168
                79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.106.2E-14115172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.02E-14115172No hitNo description
PROSITE profilePS5088815.402116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16116177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-10117168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-10122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MALEAVVFSQ DPLNYNGSKD LYSLFGGGIW ANGSFEYPEI PHDFLENQTE NFPFEDWNSA  60
SSVFVPNPSP EAAVSRNGYL FNDPNPPLEA ESTTPNSIRP RKRRPKSRKN KEEIENQRMT  120
HIAVERNRRK QMNEYLSVLR SLMPESYVQR GDQASIIGGA INFVKELEQQ VQVLSTMETK  180
GKNNSEGCCD SNSKIPFTEF FSFPQFKAME GCCSVSENEN QCSSTIADIE VTMVENHANL  240
KIRSKRRPKQ ILKIVAGLHS LSLSVLHLNI STINQIALYC LSVKVEDDCK LTSVDEIASA  300
LHQLLSRIEE DSLMN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117128RMTHIAVERNRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818471e-146LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132591e-146LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454918.10.0PREDICTED: transcription factor bHLH94-like
TrEMBLA0A1S3C0F10.0A0A1S3C0F1_CUCME; transcription factor bHLH94-like
STRINGXP_008454918.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.14e-66bHLH family protein