PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla019199 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | MYB | ||||||||
Protein Properties | Length: 470aa MW: 54517.8 Da PI: 6.5088 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 60.8 | 3e-19 | 193 | 239 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd llv++v+q+G + W+ Ia++++ gR +kqc++rw+++l Cla019199 193 KGQWTVEEDRLLVQLVEQYGVRKWSHIAQMLP-GRIGKQCRERWHNHL 239 799*****************************.*************97 PP | |||||||
2 | Myb_DNA-binding | 54.2 | 3.3e-17 | 245 | 287 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++ W++eEd l++a+ + G++ W+ Ia++++ gRt++++k++w+ Cla019199 245 KDTWSEEEDRVLIEAHSEIGNK-WAEIAKRLP-GRTENSIKNHWN 287 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 31.585 | 188 | 243 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.08E-32 | 191 | 286 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-19 | 192 | 241 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.7E-29 | 194 | 246 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.08E-16 | 196 | 239 | No hit | No description |
Pfam | PF13921 | 7.1E-20 | 196 | 253 | No hit | No description |
SMART | SM00717 | 1.1E-16 | 244 | 292 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 22.266 | 244 | 294 | IPR017930 | Myb domain |
CDD | cd00167 | 4.89E-12 | 247 | 290 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-22 | 247 | 292 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010183 | Biological Process | pollen tube guidance | ||||
GO:0045697 | Biological Process | regulation of synergid differentiation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MELESNLREN LISTQVCKKD ELLSSFEIFA SPKGNTYLQE FHHLDHQFHP IGNSSSNNYP 60 VMEDENLCSS FNPLNNNNSY SYGVEELYEF NKGNATADQV MDNFQNCGDY YHCCNNFRQR 120 NHQIEIMGLE RNSINIPLNF PEIKPLNFMV PDEVSCITSG RNGHIQKGII NKNTNFPSLL 180 RTSKGRKKPT VIKGQWTVEE DRLLVQLVEQ YGVRKWSHIA QMLPGRIGKQ CRERWHNHLR 240 PDIKKDTWSE EEDRVLIEAH SEIGNKWAEI AKRLPGRTEN SIKNHWNATK RRQYSKRKCR 300 SKYPRCSLLQ DYIKSLNLDS NNAAHHQKKS SATTSSAVNN NTKSKSADHH HHQTQTTDFC 360 PNDWTVPDFD FKEEPEFYLD DTFFPEGCSI NSLMEDIVGA SVDEANNYDR KRYNDNNEES 420 VEFRRVEMEK LQYCAPVSTA TAAGMEFEVK KELDLVEMIT QVNEVNNVMK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-44 | 189 | 293 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-44 | 189 | 293 | 54 | 158 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00442 | DAP | Transfer from AT4G18770 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 0.0 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 0.0 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008453673.1 | 0.0 | PREDICTED: transcription factor MYB98-like | ||||
Swissprot | Q9S7L2 | 2e-95 | MYB98_ARATH; Transcription factor MYB98 | ||||
TrEMBL | A0A0A0LRG5 | 0.0 | A0A0A0LRG5_CUCSA; Uncharacterized protein | ||||
STRING | XP_008453673.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1570 | 31 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18770.1 | 1e-93 | myb domain protein 98 |
Publications ? help Back to Top | |||
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