PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla018537
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 570aa    MW: 62812.4 Da    PI: 8.4655
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla018537genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12267321255
                HHHHHHHHHHHHHHHHHH.....HHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   2 rrahnerErrRRdriNsa.....feeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r +h++ E+rRR++iN++     + +Lrel+P +    ++K +Ka+ L +++eYI+ Lq
  Cla018537 267 RSKHSATEQRRRSKINDRqdfiyLYKLRELIPRS----DQKRDKASFLLEVIEYIQFLQ 321
                889**************86665578********9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.8E-18262329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13264329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088810.956265320IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.96E-13267325No hitNo description
PfamPF000109.3E-10267321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-6271326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MELPQPPRPL GTEGRKPTHD FLSLCSHSTA HQQDPSQSFQ GGFLKTHDFL RPLERIGKTC  60
AKEEKTVTVS TAGRAAPPLG ALAHNSPAER LLPGGIGTYS ISHISYFNQR VPKPEGSVFP  120
VPQASNTDKS DDNSRCSSVS GSGFTLWEES AVKKGKTRKE NLGEKPSLNE SPAKIEQWAV  180
STERPIQSSS SNHRSSFSSL SPSQPSGQQN RSFGEMLKST VNVSSMEEEL DDGKAFIIKK  240
ESSPSTAYKG DLKINVGGND QKANTPRSKH SATEQRRRSK INDRQDFIYL YKLRELIPRS  300
DQKRDKASFL LEVIEYIQFL QEKVRKYESS PPQGWYHEPA KLIPCRNNCN PAQCYIDQSQ  360
IVKSGPVFIF AGSDEKNICH SPAFPRCSHN PVESEVSTST TFREADQHPG TTNKATSYPM  420
LDPRHFIPVI SEGAKAILHS QVAYNADNKP CEMQPPLCET RSCTTNVAAV DDKLKEPEQR  480
IDGGRISISG AYSQGLLKIL TQALQSSGVD MSQACVAVQI ELGKRSNYKE TVPTPAIVDD  540
SGCPSERGII GTRVVGAEEM EQAFRKKQKT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819321e-155LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132661e-155LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008454608.10.0PREDICTED: transcription factor BIM1-like isoform X3
TrEMBLA0A1S3BZ470.0A0A1S3BZ47_CUCME; transcription factor BIM1-like isoform X3
STRINGXP_008454530.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-99bHLH family protein