PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017742
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 466aa    MW: 52336.2 Da    PI: 6.1504
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017742genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix77.52e-24118217186
   trihelix   1 rWtkqevlaLiearremeerlrrgk.............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +Wt+ +v++Li+a+ +++++ +++              +kk++W++vs++m+e+gf +sp+qC++k+++lnkryk+++++ +k+ +++++++  ++d++e
  Cla017742 118 KWTDMMVRLLITAVFYIGDEGGSEPadhagkkkpvgllQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGtACKVVENQTLLDSME 217
                7****************999998645566778899999**********************************************559********99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.6E-21116242No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MESSSLGGGG GGGGGGGGGG GGMFSGMNSS MLGLELPLHQ NPTNPPNPHQ LHHPQIVSYV  60
PHEPHHQQQP PPVAVKYPYP TKPKPQQSNL SDDDEQGFAA DDSNGDGKKK ISPWQRMKWT  120
DMMVRLLITA VFYIGDEGGS EPADHAGKKK PVGLLQKKGK WKSVSRAMME KGFYVSPQQC  180
EDKFNDLNKR YKRVNDILGK GTACKVVENQ TLLDSMELTP KTKEEVRKLL NSKHLFFREM  240
CAYHNTCRHS TSNSGAHPSP DAAAEPSHLP QQQQQRCFHA TETTTSSAAA VAAGDGLKSG  300
DEDDEEEEED ESDEEEEDEE DEEIEGRQEE EEETESRKRA RKGGITAGMQ QLSAEVMGVV  360
QDGGRSPWEK KQWMKSRLLQ LEEQQVSYQA QAFELEKQRL KWVKFRSKKE RDMERAKLEN  420
EKRRLENERM MLMVKQKELD LMGMHHYQHQ QQHSSNKRGD PSSITG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008442785.10.0PREDICTED: ESF1 homolog
TrEMBLA0A1S3B6J60.0A0A1S3B6J6_CUCME; ESF1 homolog
STRINGXP_008442785.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48203457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.15e-93sequence-specific DNA binding transcription factors