PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla017612
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NF-YA
Protein Properties Length: 388aa    MW: 42277.2 Da    PI: 9.2136
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla017612genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.95.2e-31156212158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                d p+YVNaKQy++I++RRq Rak+  e+kl +++rkpy+heSRh hA+rRpRgsgGrF
  Cla017612 156 DGPIYVNAKQYHGIIRRRQIRAKAMMENKL-ARTRKPYMHESRHLHAMRRPRGSGGRF 212
                57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-34154215IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.928155215IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.1E-23158180IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.2E-27158212IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.1E-23189212IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MAPQTGYLKE HEGIVPNSLG QLSSSPASLW SAFGQGSQSI FGDFGLVKAS SEQLGSNGKE  60
FNGTKQAAHG LEKVNIAPFS IYPGDCKISM DAQKPSPVFS LQSPLSEYQN RFELGFGQPL  120
ICANYPYMEQ HYGILSAYGP QIPGRIMLPM SLTSDDGPIY VNAKQYHGII RRRQIRAKAM  180
MENKLARTRK PYMHESRHLH AMRRPRGSGG RFLNTKNLKN GKLSMEPKKI DDVNLSDSTG  240
SQCSVVLQSE SGTLNSRNDA KGRGFSLSSS ERSSMEEGMA WFCPNGLQQL TTAATFVFDG  300
EGNGFLVQVI APKPCLCCDQ IQLATMSSTA IVSGFAMRIV PAFGCNGKSF LALTNVGVGC  360
LLSLCFASQY GKWLRETKES SNQISSMK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-18158216462NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818411e-143LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132581e-143LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022151376.10.0nuclear transcription factor Y subunit A-10
RefseqXP_022151377.10.0nuclear transcription factor Y subunit A-10
TrEMBLA0A0A0LE751e-178A0A0A0LE75_CUCSA; Uncharacterized protein
STRINGXP_004136716.11e-178(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37943464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.22e-54nuclear factor Y, subunit A10