PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla016659 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | ARR-B | ||||||||
Protein Properties | Length: 673aa MW: 73447 Da PI: 5.366 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 47.9 | 3e-15 | 210 | 256 | 1 | 45 |
G2-like 1 kprlrW...tpeLHerFveaveqLGGsekAtPktilelmkvkgLtleh 45 kpr++W ++LH++Fv av+ L G ekA+Pk+il+lm+v+gLt+e+ Cla016659 210 KPRVNWydgDENLHRKFVAAVNFL-GYEKAVPKKILDLMNVEGLTREN 256 789999444479************.********************987 PP | |||||||
2 | Response_reg | 83.5 | 6.5e-28 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 +l vdD+p+ +++l+++l+k +y +v+++ ++ +al++l+e++ +Dl++ D++mp+mdG++ll+ e++lp+i+++ah++ e++++ + Ga Cla016659 26 ILAVDDDPICLKVLENLLRKCQY-HVTTTNQAVQALKMLRENKnrFDLVISDVNMPDMDGFKLLELVGL-EMDLPVIMLSAHSNTELVKKGVIHGAC 120 799********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel + Cla016659 121 DYLLKPVRIEELKN 134 ***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 2.4E-122 | 6 | 668 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 4.5E-43 | 23 | 159 | No hit | No description |
SuperFamily | SSF52172 | 1.05E-36 | 23 | 150 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 4.5E-34 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.473 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.3E-25 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 3.49E-30 | 27 | 140 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.0E-14 | 208 | 256 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.12E-6 | 208 | 256 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-13 | 210 | 256 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MTVEVGRANL VGENEDMDQF PIGMRILAVD DDPICLKVLE NLLRKCQYHV TTTNQAVQAL 60 KMLRENKNRF DLVISDVNMP DMDGFKLLEL VGLEMDLPVI MLSAHSNTEL VKKGVIHGAC 120 DYLLKPVRIE ELKNIWQHVL RRKKPSAKNQ NKCTNGNNTS QSVEGAKGFP PAISTDNEKP 180 GKRQKDQDDD EEGGEEDSTY ENDDSSTQKK PRVNWYDGDE NLHRKFVAAV NFLGYEKAVP 240 KKILDLMNVE GLTRENEAQQ CNMMGAFGGK QTSFRPMASL NGFSMTGTGR LSNATFSPYP 300 SQEIVGQLNS TSGLSLHGIA SSGMFQSHKL NSSLNTFGKS HPAFLLANQP PHTFNGISTS 360 SDHIQLHRDK CTLSFKESNS INDASSFTVS TSFPDARMAV GSSSNYDFGS SHLLMLRGQK 420 QQIQGGGEFG GQSSLKVTLD NPEPLANGTG VSNILGHGES NKNWPGSIQL PKFSSNVSVT 480 GIYPPAGMPA TYLTISSAQP DNDNFPVGFP STSVDSSSQL DLRGDTQCYE ELIGSVVEAM 540 NGRSKQQWDA AKQDYYGNHS SIVRDSLVSG NSVVDPLNQM ANQNNAICLE NIGSSSTNQL 600 NDGAPTFIHN GAEISAMDTW MNYDGKILMD QTKLQSGFAN SSFNSLDELV NALSKQVSSN 660 ILHNLSIFPI PNS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayz_A | 8e-14 | 11 | 133 | 3 | 117 | Sensor kinase protein rcsC |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681847 | 0.0 | LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003. | |||
GenBank | LN713259 | 0.0 | LN713259.1 Cucumis melo genomic chromosome, chr_5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008457369.1 | 0.0 | PREDICTED: two-component response regulator ARR12-like | ||||
TrEMBL | A0A1S3C613 | 0.0 | A0A1S3C613_CUCME; two-component response regulator ARR12-like | ||||
STRING | XP_008457369.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 2e-98 | response regulator 12 |