PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla016209
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 378aa    MW: 43896.7 Da    PI: 4.8201
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla016209genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1002.2e-31161072102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Flkkly+i++d+++++++sw+++ +sf +ld ++f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++++          weF+ + F kg+k+ll++i 
     Cla016209  16 FLKKLYDIVDDDSTNSIMSWTSSHDSFTILDITQFSLHLLPKYFKHSNFSSFMRQLNIYGFRKIDTDC---------WEFATDGFIKGQKHLLKNIY 103
                   9***************************************************************9987.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
     Cla016209 104 RRKN 107
                   **97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.1E-336100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.86E-3011105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-4812105IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.0E-2716105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-171639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-175466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-176779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MVKTAAERQG SSVAPFLKKL YDIVDDDSTN SIMSWTSSHD SFTILDITQF SLHLLPKYFK  60
HSNFSSFMRQ LNIYGFRKID TDCWEFATDG FIKGQKHLLK NIYRRKNIQG TDQRKASQPQ  120
DNSKGQVELH ENSGLWEEVE NLKIDKNAVM QELVKLKRHQ ENSENKLLLL RDRLQGMEKN  180
QQQMLSFLVM AVQSPGFLVQ FLQPKEKNWS MADAGNMLEQ IPDDNQVPSN GMIVRYQRPL  240
DELSTTLLPA VMGPGKQESD PFPNGMKDFF LNSDFMKVLM DEKLCLDNHS QFVLPDVQDI  300
AWEQLLLASP FSGNSDYARK IDHERGPVDN EDDELDMETI DTRIHEEKSQ DFELLIRQME  360
KCEDFEIQPR LDESYIKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-221110524129Heat shock factor protein 1
5d5v_B2e-221110524129Heat shock factor protein 1
5d5v_D2e-221110524129Heat shock factor protein 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819070.0LN681907.1 Cucumis melo genomic scaffold, anchoredscaffold00093.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004142267.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLA0A0A0KMJ20.0A0A0A0KMJ2_CUCSA; Uncharacterized protein
STRINGXP_004163707.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-98heat shock transcription factor A8