PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla015913
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 475aa    MW: 51838.8 Da    PI: 6.0921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla015913genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.85.4e-10277324455
                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Cla015913 277 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 324
                8**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.74E-10271328No hitNo description
SuperFamilySSF474599.81E-17271342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58273323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-17273340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-7277324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9279329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MNRALPEMLH CLNTTGNCPD TLSVLERQRA RLKWQQDQLL QQQQQPLNQS CFNKVDYGGG  60
FPPPVAVPAD HFTGFPGYMN GGGGGGGGGL SLVEMVMGAV KSDPGLNDGW SEMGKFDPSL  120
LLNATAYELN SSLSRTSSCP PAVAPTVAEK MGSAAGRDSF KKRKAEKVHN TTTTTTNNNN  180
NSKAKVETKS MRDLQVTVEE DNISSSKEKR IKASSEEGEL SKTTDQNSTK NNSTTTTTTN  240
NNRETSADTS KENSKASEVQ KPDYIHVRAR RGQATDSHSL AERARREKIS ERMKYLQDLV  300
PGCNKITGKA GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFNVDDLFN KEVFPPSCTT  360
ANFPTIGGMS SEMTDPSSYL QFNPNNQQMV SCCGLEMGIN TSDAAALRRT ISAPVSFPET  420
FLDSSCLTQF QPSSGWDVDL QNLYNVGFDQ GRSSNAFSSQ PYTGSIEGGI IKMEM
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817981e-167LN681798.1 Cucumis melo genomic scaffold, anchoredscaffold00019.
GenBankLN7132551e-167LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011658545.10.0PREDICTED: transcription factor bHLH63-like
TrEMBLA0A0A0K0C80.0A0A0A0K0C8_CUCSA; Uncharacterized protein
STRINGXP_004173629.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF36183463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.11e-59cryptochrome-interacting basic-helix-loop-helix 1