PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla015161

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 419aa MW: 46916.3 Da PI: 9.6889

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla015161	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.3	7.2e-08	129	170	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE ++l d+++++ + + Ia +++ +Rt +++k+r++ Cla015161 129 SWTKEETDQLFDLCERFDLR-FIVIADRFPSTRTVEELKERYY 170 7*****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	4.1E-30	102	176	IPR032563	DAMP1, SANT/Myb-like domain
Gene3D	G3DSA:1.10.10.60	4.3E-7	124	172	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.8E-7	125	172	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-8	126	175	IPR001005	SANT/Myb domain
CDD	cd11658	1.13E-18	130	172	No hit	No description
Pfam	PF05499	4.1E-6	318	382	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDAKDILGLP KNTLPLPQEK KPRAQKDAQR KRDGISREVY ALTGGLAPIM PAIDTSELKK 60 RPPSDEKITW QWLPFSNSAR KDNLQLYHWV RVVNGIPPTG DYSFAKYNKS VEVVKYTDEE 120 YEKYLKDTSW TKEETDQLFD LCERFDLRFI VIADRFPSTR TVEELKERYY RASRAILAAR 180 GPTSRESSGN TPAKDPYNVS QEIERKRALS MVLSQTKQQE RKDAEVLAEA KKITEARRAE 240 KVAEESELPV TSNAVPEVTE KAVVPGESVP SVSNVQPPPP AAVPSTVVAD NASTLASLRM 300 LPVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLSVNL KPRVPTKAVC AEHLELRKEI 360 LTLLNLQKQL QNKEAEGSSF RESPYNEAPG TPKATGRLSE APSSPAQSKR PRKQKGSDL

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDAKDILGLP KNTLPLPQEK KPRAQKDAQR KRDGISREVY ALTGGLAPIM PAIDTSELKK  60
RPPSDEKITW QWLPFSNSAR KDNLQLYHWV RVVNGIPPTG DYSFAKYNKS VEVVKYTDEE  120
YEKYLKDTSW TKEETDQLFD LCERFDLRFI VIADRFPSTR TVEELKERYY RASRAILAAR  180
GPTSRESSGN TPAKDPYNVS QEIERKRALS MVLSQTKQQE RKDAEVLAEA KKITEARRAE  240
KVAEESELPV TSNAVPEVTE KAVVPGESVP SVSNVQPPPP AAVPSTVVAD NASTLASLRM  300
LPVYLRTYAL EQMVQAASSS AGLRTIKRVE QTLQDLSVNL KPRVPTKAVC AEHLELRKEI  360
LTLLNLQKQL QNKEAEGSSF RESPYNEAPG TPKATGRLSE APSSPAQSKR PRKQKGSDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	2e-22	101	170	4	77	DNA methyltransferase 1-associated protein 1
4iej_A	2e-22	101	170	4	77	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	31	KKPRAQKDAQRKR

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681803	8e-66	LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBank	LN713255	8e-66	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659406.1	0.0	PREDICTED: DNA methyltransferase 1-associated protein 1
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	A0A0A0K9K0	0.0	A0A0A0K9K0_CUCSA; Uncharacterized protein
STRING	XP_008451441.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4975	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	1e-178	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]