PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014794
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 370aa    MW: 42641.8 Da    PI: 4.9421
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014794genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.31.4e-34441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++ei++d +++++isws  g+sf+v+d++ f++++Lp++Fkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +g+k+ll++ik
     Cla014794  44 FLTKTFEIVDDFNTDHVISWSFAGTSFIVWDPHCFSTQLLPRFFKHNNFSSFVRQLNTYGFRKIDPDR---------WEFANEGFIRGQKHLLKNIK 131
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r++ 
     Cla014794 132 RRRA 135
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.04E-3440133IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.3E-3740133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004157.9E-5940133IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3044133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-184467IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-188294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-1895107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MNPLFPVKEE FPGSCSLDVD GERSAIMAPP LPMEGLHDAG PPPFLTKTFE IVDDFNTDHV  60
ISWSFAGTSF IVWDPHCFST QLLPRFFKHN NFSSFVRQLN TYGFRKIDPD RWEFANEGFI  120
RGQKHLLKNI KRRRATTFHH HHHNQTFQSQ AANGACVEVG QFGVDAEMDR LKRDKQVLMM  180
ELVKLRQEQQ NTRAYLQAME QRLRGTEIKQ KQMMNFLARA MKNPSFIQQL IQQKEKRKEL  240
EEAITKKRRR PIEQAGQHSS GGNGRFLGEG SNSIKIEPLE NDEYGFGITE LEALALEMQG  300
LGKTRHEDEE EEEEEEEEDD NLLPSEDEDK VLDEGFWEEL FSERLEVARS GDENVNVLAD  360
RLGYLGSSPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-243913712124Heat shock factor protein 1
5d5u_B2e-243113314129Heat shock factor protein 1
5d5v_B2e-243113314129Heat shock factor protein 1
5d5v_D2e-243113314129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1126132LKNIKRR
2235249KRKELEEAITKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818030.0LN681803.1 Cucumis melo genomic scaffold, anchoredscaffold00026.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146995.10.0PREDICTED: heat stress transcription factor A-6b-like isoform X2
SwissprotQ9LUH81e-128HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A1S3BSA30.0A0A1S3BSA3_CUCME; heat stress transcription factor A-6b-like isoform X2
STRINGXP_004158938.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-126heat shock transcription factor A6B