PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla014559

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

SRS

Protein Properties

Length: 272aa MW: 29579.9 Da PI: 6.8451

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla014559	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	100.3	3.5e-31	95	156	5	66
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaas 66 +sCqdCGnqakkdC+++RCRtCCksrgf+C+thvkstWvpa+krr+r+ + a++ k+ ++ Cla014559 95 VTSCQDCGNQAKKDCVYMRCRTCCKSRGFECETHVKSTWVPASKRRDRHLRCLASNPKRPKD 156 469*********************************************76666655555544 PP
2	DUF702	83.8	4.1e-26	161	219	97	155
DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ++ le+ ++P ev+s+avfrcvr++++d+ ++++aYqtav+igGh+fkGiLyd+G+e++ Cla014559 161 SSGLEMGNFPVEVNSTAVFRCVRMTTLDETNDQYAYQTAVNIGGHIFKGILYDHGPEQQ 219 45678889************************************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	3.5E-51	96	217	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.8E-28	97	139	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.1E-25	169	216	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MAGFFPLGGA GSSGRGSNYH LPTTTTSITT SGGEIIHPNE GLFWYKNYER LETWEEQQQP 60 QEQGGEGFVY SGDESPARSS LVMVRSGRGG GGGHVTSCQD CGNQAKKDCV YMRCRTCCKS 120 RGFECETHVK STWVPASKRR DRHLRCLASN PKRPKDNPAA SSGLEMGNFP VEVNSTAVFR 180 CVRMTTLDET NDQYAYQTAV NIGGHIFKGI LYDHGPEQQL QQQPPTSASP DASALLITTA 240 ESAALLDPPP QYPTPLSTYI ATGTQFFLPP TS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN682015	7e-87	LN682015.1 Cucumis melo genomic scaffold, unanchored_scaffold00177.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023553114.1	1e-131	protein SHI RELATED SEQUENCE 1-like
Swissprot	K4B6C9	9e-59	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A0A0KUG2	1e-123	A0A0A0KUG2_CUCSA; Uncharacterized protein
STRING	XP_004167428.1	1e-125	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24705	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-59	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]