PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla014286
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family bHLH
Protein Properties Length: 408aa    MW: 45507.8 Da    PI: 8.6792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla014286genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.51.4e-09135182354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +  rE+ RRdr+N+ f eL   l ++     +K++Ka+iL+ +++ +k+L
  Cla014286 135 IQKADREKLRRDRLNEHFLELGNTLDPD----RPKNDKATILTDTIQMLKDL 182
                56789********************997....79****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.982132182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-13133202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.85E-8133186No hitNo description
Gene3DG3DSA:4.10.280.109.8E-12134205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-7135182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-7138188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MIKIGWGAGH PRGRGSWSAR SGVGFCGIVS YYSGDCLLPF RFPDFPLSFG RDQRNSTLRF  60
TRRFALFKYP FGILMEQWKT GDFTQSIVPA DLVPSSSLQP QPVAVSSTRH HNNQLTESRL  120
RADAEVKDPI AVRKIQKADR EKLRRDRLNE HFLELGNTLD PDRPKNDKAT ILTDTIQMLK  180
DLTAEVNRLK ADYETLSEES RELTQEKNEL REEKASLKSD IENLNAQYQQ RLRVMFPWAT  240
MDPSVVMGPP YSYPVPVPVP PGPIPMHPSL QPFTFFGNQN PGAIPNPCST FVPYTAAANH  300
PIDQPSAHYA SNSHVSSKQD SRSKSSDQHR RSNAERCDES NDVATDLELK MPGSSTQQDA  360
SSGSKKGKQS QSKEKSVTDC SSSSRFSSSQ VLQDSSSNSV GDIPKQNN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008440819.10.0PREDICTED: transcription factor bHLH121
SwissprotQ9LT233e-86BH121_ARATH; Transcription factor bHLH121
TrEMBLA0A1S3B2M70.0A0A1S3B2M7_CUCME; transcription factor bHLH121
STRINGXP_008440819.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.23e-73bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]