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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Cla014074 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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| Family | bHLH | ||||||||
| Protein Properties | Length: 286aa MW: 32174.7 Da PI: 7.4218 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 35.1 | 2.3e-11 | 105 | 151 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
h ++ErrRR+++ + f L l+P + K +Ka++L A++Y+k+Lq
Cla014074 105 EHVIAERRRREKLSQNFVALSALIPGL-----NKRDKASVLGGAIKYVKELQ 151
5999**********************8.....5******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.119 | 101 | 150 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-15 | 105 | 168 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 9.5E-9 | 105 | 151 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 5.20E-12 | 106 | 155 | No hit | No description |
| SuperFamily | SSF47459 | 3.93E-15 | 106 | 162 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 6.8E-12 | 107 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 286 aa Download sequence Send to blast |
MMECSYEYET NNYTLDELNF PGSKKVNTLT SSQLISFGDY SAEIENKFDY GSCVNWVGVD 60 KDKDFSFLIS NQNNGNLIGF EEEGHGIKKA ATTIMGPNNY GNGKEHVIAE RRRREKLSQN 120 FVALSALIPG LNKRDKASVL GGAIKYVKEL QERLKWAEEE AADQKRVIKS VVFGPKRIDL 180 DSDSDDKTSS WDENGGVFSV QPIPKIETRV LEKDVLVRIH CKKHKGCLTN ILSQIEKLNL 240 TIVNSCVLPF GHSRLDITIV AKMEVGFCMT ARNLGKKLRE TLVEFI |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 109 | 114 | ERRRRE |
| 2 | 110 | 115 | RRRREK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004143535.1 | 1e-125 | PREDICTED: transcription factor bHLH25-like | ||||
| TrEMBL | A0A1S3B1X4 | 1e-119 | A0A1S3B1X4_CUCME; transcription factor bHLH25-like | ||||
| STRING | XP_004143535.1 | 1e-124 | (Cucumis sativus) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF24693 | 3 | 3 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G37850.1 | 8e-49 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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