PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla013469

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

LBD

Protein Properties

Length: 173aa MW: 19013.6 Da PI: 7.7712

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla013469	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	146.2	9e-46	15	114	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca+dCv+apyfpa++p+kfa vhk+FGasnv k+l++lpe++r+da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la +++e Cla013469 15 PCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAE 114 7**********************************************************************************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	27.39	14	115	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-45	15	112	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MKEIGGRKQG TSLSPCAACK LLRRRCAQDC VFAPYFPADE PHKFASVHKV FGASNVNKML 60 QELPEQQRSD AVSSMVYEAN ARVRDPVYGC VGAISSLQQQ IDLLQTQLAI AQAEVVHMRM 120 RQFPSTSCNP TAGHSPETTS PSGKMNIPAP NKSYFSMDMV DHDNMGESLW SSC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-47	14	116	10	112	LOB family transfactor Ramosa2.1
5ly0_B	3e-47	14	116	10	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN683706	1e-106	LN683706.1 Cucumis melo genomic scaffold, unassembled_sequence31212.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004150042.1	1e-123	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	5e-69	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A0A0KBA8	1e-121	A0A0A0KBA8_CUCSA; Uncharacterized protein
STRING	XP_004150042.1	1e-122	(Cucumis sativus)
STRING	XP_004161659.1	1e-122	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1334	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-62	LOB domain-containing protein 4