PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla013059
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 476aa    MW: 54293.9 Da    PI: 5.9229
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla013059genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-1781170299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                +kv++ps+v+   +l lpk f+++h    ++++ ++ledesg  +e k+  +k++    l++GW++F  a++L +gD++vF+l+  ++f  +v ++r+
  Cla013059  81 IKVMLPSHVTGGFWLGLPKGFCDSHLP--KQDTAMVLEDESGLLYETKYLSEKTG----LSAGWRGFSMAHKLLQGDVIVFHLVMPNKF--MVYIVRS 170
                699**********************53..36789***************444444....***********************9865666..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-1873171IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.49E-2173171IPR015300DNA-binding pseudobarrel domain
CDDcd100171.82E-2378169No hitNo description
SMARTSM010191.8E-1980171IPR003340B3 DNA binding domain
PROSITE profilePS5086312.54880171IPR003340B3 DNA binding domain
PfamPF023622.9E-1581170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MNQWRPRKKE KLFRRKTWVS STQPSTSYDQ EAAHSFSLTR SVKPKRTTVD SLYHDFQAQS  60
VVMARAKEVQ EKLSPSYPSL IKVMLPSHVT GGFWLGLPKG FCDSHLPKQD TAMVLEDESG  120
LLYETKYLSE KTGLSAGWRG FSMAHKLLQG DVIVFHLVMP NKFMVYIVRS NAAAEVDGAL  180
GRKYEACNKQ KPLYRKENVP HIKEEQITLD VVNSKGTTIV PKLPMKEEEE EEEEEEEEEN  240
YNPVSLAMDI HEQHEQTNSH VLLDTEMMPV LDESENERKS FGSNSMNGIR LSDSTLDFDK  300
VNSLNDFTIS VNGLIIDSEF SSYIRTKYYE LCCSQKSFLH DHILEGLNCK LVSGIISETI  360
NIADAIRACK VTTSKEHLVT WDKTLTAFEG LGMNVGFLRV RINQLLTLSL KPEKKREAEL  420
KRDSIQEEIR ILLTKIMEGR ATVRQLEAEI RSLDTDIEHM DKLFKEVASA PWCCEG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008456112.10.0PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
TrEMBLA0A1S3C2200.0A0A1S3C220_CUCME; B3 domain-containing protein Os01g0234100-like isoform X1
STRINGXP_008456112.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10073398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.14e-38B3 family protein