PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla012828

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

Nin-like

Protein Properties

Length: 1001aa MW: 110712 Da PI: 5.448

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla012828	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.4	3.4e-29	599	650	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isle+l++yF++++kdAAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Cla012828 599 AEKSISLEVLQQYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 650 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.871	589	670	IPR003035	RWP-RK domain
Pfam	PF02042	3.8E-26	603	650	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.06E-23	900	989	No hit	No description
PROSITE profile	PS51745	25.965	906	988	IPR000270	PB1 domain
SMART	SM00666	2.2E-25	906	988	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.2E-26	907	987	No hit	No description
Pfam	PF00564	1.3E-18	907	987	IPR000270	PB1 domain
CDD	cd06407	1.34E-37	907	987	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 1001 aa Download sequence Send to blast
MTEPDSDHPS PLFPKSTHRS TSDDRTPLMD FDLDLDIPWP LDQIPSFASN PMSPFLLSTS 60 DHLASPLWGF SEADDDDDSK FAAYACSVLG TSNSHSVPQK PTENQKFKIL PVPSSSWGLL 120 PSENPDGYCL IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKFVLSTSG QPFVLDSQSN 180 GLHQYRMASL TFMFSLDPDQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALNYN 240 VQGTLALPVF DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ 300 IQSWQCFSNQ ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LAYGGGLKKN 360 CTSFDGSCMG RICMSATEVA SYVVDAHMWG FRDACLEHHL QKGQGVSGRA FLSHSSCFCG 420 DITQFCKTEY PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKTLLG 480 ALMATMKKHF YTLKVASGIN LEDKEGLVEI IQASRNGGFE SRLEYIQIPR PMELAPVSDD 540 IPKAVEVVAL ETLQQQSLMV HDAPKDENNS ARDGESHNPI PCPQNKEVKK TSERKRGKAE 600 KSISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV 660 IESVQGAEGA FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDS QYKETNTSEA 720 QTNDTQARLE DQLHRVLSPE EPIHEQNGYL PKFGNGLNNF RTGSGSREES AGTPTSHGSC 780 QGSPANDSAL ANNPISIPQH EQCVRRESPE VAFHSIDKLN ISAPACPISD AIVMVEPEEP 840 FGGMLIEDAG SSKDLKNLCA SVTDAVLDEQ VPEFCWSNPP DMALRQPMDS ICHTVPHISL 900 RQEPRRMTIK ATYKEDIIRF RIPLSSGIVE LREEVAKRLK LEVGTFDIKY MDDDREWVLI 960 ACDADLQECV DISKSSGSNI IRLSVHDLNV HLGSSCESTG E

Sequence ? help Back to Top

Protein Sequence Length: 1001 aa Download sequence Send to blast

MTEPDSDHPS PLFPKSTHRS TSDDRTPLMD FDLDLDIPWP LDQIPSFASN PMSPFLLSTS  60
DHLASPLWGF SEADDDDDSK FAAYACSVLG TSNSHSVPQK PTENQKFKIL PVPSSSWGLL  120
PSENPDGYCL IKEKMAQALR YIKESSDQHV LAQVWAPVKS GGKFVLSTSG QPFVLDSQSN  180
GLHQYRMASL TFMFSLDPDQ DGYLGLPGRV FQQKLPEWTP NVQYYSSKEY PRLSHALNYN  240
VQGTLALPVF DPSGHSCLGV LELIMTSPKI NYAPEVDKVC KALEAVNLKS SEILDHPNNQ  300
IQSWQCFSNQ ICNEGRQNAL AEILEVLTVV CETHNLPLAQ TWVPCRHRNV LAYGGGLKKN  360
CTSFDGSCMG RICMSATEVA SYVVDAHMWG FRDACLEHHL QKGQGVSGRA FLSHSSCFCG  420
DITQFCKTEY PLVHYALMFG LKSCFSICLR STFTGDDEYI LEFFLPPSIV DYQEQKTLLG  480
ALMATMKKHF YTLKVASGIN LEDKEGLVEI IQASRNGGFE SRLEYIQIPR PMELAPVSDD  540
IPKAVEVVAL ETLQQQSLMV HDAPKDENNS ARDGESHNPI PCPQNKEVKK TSERKRGKAE  600
KSISLEVLQQ YFAGSLKDAA KSLGVCPTTM KRICRQHGIS RWPSRKINKV NRSLSKLKRV  660
IESVQGAEGA FGISSLATSP LPVTVSSSSH PLTPEGSNQQ NFVASQPSDS QYKETNTSEA  720
QTNDTQARLE DQLHRVLSPE EPIHEQNGYL PKFGNGLNNF RTGSGSREES AGTPTSHGSC  780
QGSPANDSAL ANNPISIPQH EQCVRRESPE VAFHSIDKLN ISAPACPISD AIVMVEPEEP  840
FGGMLIEDAG SSKDLKNLCA SVTDAVLDEQ VPEFCWSNPP DMALRQPMDS ICHTVPHISL  900
RQEPRRMTIK ATYKEDIIRF RIPLSSGIVE LREEVAKRLK LEVGTFDIKY MDDDREWVLI  960
ACDADLQECV DISKSSGSNI IRLSVHDLNV HLGSSCESTG E

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653226.1	0.0	PREDICTED: protein NLP7-like isoform X1
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A1S3BSP0	0.0	A0A1S3BSP0_CUCME; LOW QUALITY PROTEIN: protein NLP7-like
STRING	XP_008451916.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4257	34	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]