PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012385
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Whirly
Protein Properties Length: 138aa    MW: 15417.1 Da    PI: 10.0775
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012385genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly134.16.7e-423913617114
     Whirly  17 tfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpdGsGlfvnlsvtns 114
                ++  ++sg+l+++r+G+++l + +a++erkydW kkq fals+tev++l++l++++sceffhdp++ +s +G+vrk+l ++ ++dG G+f++ls +++
  Cla012385  39 KILLIQSGSLVIDRRGSVMLSFFPAIGERKYDWTKKQLFALSPTEVGTLISLGPRDSCEFFHDPGMLSSTAGQVRKSLTIKAHADGNGYFISLSKDTN 136
                556689***************************************************************************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF544471.73E-3142137IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.6E-3842136IPR013742Plant transcription factor
Gene3DG3DSA:2.30.31.103.2E-3843136IPR009044ssDNA-binding transcriptional regulator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKAGVSYLNK LCVRKLVMLD ILWGRILSHL ELAFQIRDKI LLIQSGSLVI DRRGSVMLSF  60
FPAIGERKYD WTKKQLFALS PTEVGTLISL GPRDSCEFFH DPGMLSSTAG QVRKSLTIKA  120
HADGNGYFIS LSKDTNIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A2e-474313836131Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B2e-474313836131Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C2e-474313836131Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D2e-474313836131Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that associates with mitochondrial DNA and may play a role in the regulation of the gene expression machinery. Seems also to be required to prevent break-induced DNA rearrangements in the mitochondrial genome. Can bind to melt double-stranded DNA in vivo. {ECO:0000269|PubMed:18423020, ECO:0000269|PubMed:20551348, ECO:0000269|PubMed:22762281}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022973421.13e-55single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotQ8VYF72e-46WHY2_ARATH; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A0A0KXS22e-48A0A0A0KXS2_CUCSA; Uncharacterized protein
STRINGXP_004141520.14e-49(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.19e-49WHIRLY 2