PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla011588
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family C2H2
Protein Properties Length: 281aa    MW: 31954 Da    PI: 8.207
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla011588genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097426123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               +kC+ C++ F++   L  H++ H
  Cla011588  4 HKCKLCSRAFTNGRALGGHMKAH 26
               79******************998 PP
2zf-C2H211.90.00069176197223
                EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                kC++C+k F++   L +H + +
  Cla011588 176 KCEKCKKQFRSYRALFSHEKIC 197
                7*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.03E-5328No hitNo description
PfamPF139121.1E-6427IPR007087Zinc finger, C2H2
PROSITE profilePS501579.889426IPR007087Zinc finger, C2H2
SMARTSM003550.054426IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
SMARTSM0035553175195IPR015880Zinc finger, C2H2-like
PfamPF139120.0021176193IPR007087Zinc finger, C2H2
SuperFamilySSF576675.0E-7176244No hitNo description
PfamPF139121.8E-10222244IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432222244IPR007087Zinc finger, C2H2
SMARTSM003550.57222244IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280224244IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MESHKCKLCS RAFTNGRALG GHMKAHLTAA AALPLPPPKP PSTSSSSTAD DDDDDDFQFL  60
PEDKPTLYDL RENPKRNFRF SDPVFNIVLQ DRESETESKN PTRKRSKRWR KPPPVEAEPG  120
SSVSDASPEA DLAICLMMLS RDQWIKNQNQ NQNQQRSFDE LGSTIKVKKG IRRKKKCEKC  180
KKQFRSYRAL FSHEKICQLE TEQEQEQEQE EIFKNEGNTR IFKCPFCYKL FGSGQALGGH  240
KRSHLVSSTN GSVSLKLQIS LIDLNLPAPL EEDDYSVVYD A
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818951e-164LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-164LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023532763.11e-124zinc finger protein ZAT9-like
TrEMBLA0A1S3ATN81e-120A0A1S3ATN8_CUCME; zinc finger protein ZAT9
STRINGXP_004169199.11e-121(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.15e-23C2H2-like zinc finger protein