PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla010890 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | bHLH | ||||||||
Protein Properties | Length: 128aa MW: 14125.2 Da PI: 6.5079 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.3 | 0.00063 | 36 | 55 | 35 | 54 |
TS-STCHHHHHHHHHHHHHH CS HLH 35 skKlsKaeiLekAveYIksL 54 s K + a++L +A+eYI+ L Cla010890 36 SSKTDTASVLLEAMEYIQFL 55 7899**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 3.14E-6 | 35 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-5 | 36 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
MDVETMMEQK RSLCSVDESA LTSLTSKRPK TDFSISSKTD TASVLLEAME YIQFLHEQVK 60 VLSAPYLQST PTVLLQELEA CSHSLRSRGL CLVPISYTAG VARSNGADIW APVKTISPKF 120 EKPISPFN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681874 | 5e-58 | LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031. | |||
GenBank | LN713261 | 5e-58 | LN713261.1 Cucumis melo genomic chromosome, chr_7. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008454045.1 | 1e-77 | PREDICTED: transcription factor bHLH113-like isoform X2 | ||||
Refseq | XP_008454046.1 | 1e-77 | PREDICTED: transcription factor bHLH113-like isoform X4 | ||||
Swissprot | Q7XJU2 | 2e-42 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | A0A1S3BX75 | 2e-76 | A0A1S3BX75_CUCME; transcription factor bHLH113-like isoform X4 | ||||
TrEMBL | A0A1S3BYX6 | 3e-76 | A0A1S3BYX6_CUCME; transcription factor bHLH113-like isoform X2 | ||||
STRING | XP_008454043.1 | 2e-76 | (Cucumis melo) | ||||
STRING | XP_004152130.1 | 1e-76 | (Cucumis sativus) | ||||
STRING | XP_004156961.1 | 1e-76 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10813 | 31 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 8e-45 | bHLH family protein |
Publications ? help Back to Top | |||
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