PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010705
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family MYB_related
Protein Properties Length: 304aa    MW: 32641 Da    PI: 10.5861
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010705genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.43.9e-1462107247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++W++eE+  ++ + k+lG+g+W+ I++ + ++Rt+ q+ s+ qky
        Cla010705  62 KPWSEEEHRTFLAGLKKLGKGDWRGISKNFVTTRTPTQVASHAQKY 107
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.71156112IPR017930Myb domain
SuperFamilySSF466892.87E-1658110IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-1759111IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.8E-1260107IPR009057Homeodomain-like
SMARTSM007171.3E-1160110IPR001005SANT/Myb domain
PfamPF002497.8E-1262107IPR001005SANT/Myb domain
CDDcd001679.77E-1063108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGNLNLHACN NVLDLNNVAA ASAVNYLAGD NAAASADDAG YLSDGLIHNK RRKAAHERKK  60
GKPWSEEEHR TFLAGLKKLG KGDWRGISKN FVTTRTPTQV ASHAQKYFLR KMNANDKKKR  120
RASLFDIPEN KNNVPQDCQA SGETSSQILL PKNNNSENQQ QVNNLPTQLI NRFPHLCLDT  180
PHFIPPPNGS AATAAVANLN GNPYVVGVSP NNVPMIPMVN LGRRGGGVMS PTRSPMAAHP  240
SGIPPSPRSS PSRPLLLHQL QPSALAAVAA SSFETDALEL KIGLPQSPQP KNLSSQTSGA  300
IRVI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116120KKKRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818741e-79LN681874.1 Cucumis melo genomic scaffold, anchoredscaffold00031.
GenBankLN7132611e-79LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023553250.11e-166probable transcription factor At5g61620
TrEMBLA0A1S3BXC81e-142A0A1S3BXC8_CUCME; transcription factor MYB1R1
STRINGXP_008453854.11e-142(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF138741921
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.19e-42MYB_related family protein