PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla010279
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family B3
Protein Properties Length: 418aa    MW: 48151.7 Da    PI: 7.0735
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla010279genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.81.2e-1544126395
                EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                k+l++s++l++    +pkkfa+++g +   s  +tl  ++g +W ++l  +++++++++++GW +Fvk + +++g  +vF+++g+s f+  + 
  Cla010279  44 KKLINSMYLQK----IPKKFAKKFGDD--LSDLVTLVVPNGYRWVLEL--KRHGRSMWFEDGWHDFVKHHCIQVGQLLVFRFEGNSVFN--FY 126
                56666666654....9********988..7889***************..*********************************999994..44 PP
2B3696.6e-22320410498
                E-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3   4 vltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                v+ +s+v +   l +p kfae++ +g+   s ++tl+ +sg++W+v++   + + ++ lt+GW +Fv +n+Lke D++vF+l++ ++  l+v+vfr
  Cla010279 320 VMRQSYVRRGFHLHIPSKFAEKYlKGV---SGEITLQVSSGKQWRVRC--IREGPGTKLTRGWADFVVDNDLKEEDVCVFELIDIKDIVLKVTVFR 410
                57899******************8666...348***************..67777789************************98899999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.8E-2131129IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.1E-1032131IPR003340B3 DNA binding domain
CDDcd100178.93E-1544129No hitNo description
SuperFamilySSF1019366.87E-2051129IPR015300DNA-binding pseudobarrel domain
PfamPF023621.5E-1254125IPR003340B3 DNA binding domain
PROSITE profilePS5086313.02855131IPR003340B3 DNA binding domain
SuperFamilySSF1019361.57E-25311411IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-26311410IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-23315410No hitNo description
SMARTSM010196.4E-18317412IPR003340B3 DNA binding domain
PROSITE profilePS5086314.043317412IPR003340B3 DNA binding domain
PfamPF023621.1E-20320410IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MENSVTAMPE SNEQDGAQSF NETSPARRAG LFYKLVVPSI LQDKKLINSM YLQKIPKKFA  60
KKFGDDLSDL VTLVVPNGYR WVLELKRHGR SMWFEDGWHD FVKHHCIQVG QLLVFRFEGN  120
SVFNFYMFNL TAIPNGPCDT SNEQNNGGQC PVTLGKEAEY KKLVEIFGTS SPDPSPRPSV  180
QNAFCEFPDQ QKFNGSCNGT SIKNFMHWFD TENLHPLKDF DNPLKDLDKL RLQLLNSNRD  240
IGIQFDGDEL AKARENHDFQ FSDEREEGAR KKKLKVEPID YYNDNEPIVE KKCGNITHKI  300
SRMPFGVEEF KFGNPFCWIV MRQSYVRRGF HLHIPSKFAE KYLKGVSGEI TLQVSSGKQW  360
RVRCIREGPG TKLTRGWADF VVDNDLKEED VCVFELIDIK DIVLKVTVFR VHDDPTKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-2830641338144B3 domain-containing transcription factor VRN1
4i1k_B3e-2830641338144B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819140.0LN681914.1 Cucumis melo genomic scaffold, anchoredscaffold00050.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004145348.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLA0A0A0LP180.0A0A0A0LP18_CUCSA; Uncharacterized protein
STRINGXP_004145348.10.0(Cucumis sativus)
STRINGXP_004153258.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21473485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.15e-29related to vernalization1 1