PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cla010130

Organism

Citrullus lanatus

Taxonomic ID

3654

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus

Family

MYB_related

Protein Properties

Length: 319aa MW: 34682.4 Da PI: 9.1681

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cla010130	genome	ICuGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.7	2.8e-13	101	145	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ l++ + ++ G+g+W+ I+r + k+Rt q+ s+ qky Cla010130 101 PWTEEEHRLFLLGLQKVGKGDWRGISRNFVKTRTSTQVASHAQKY 145 7*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.60.10	6.9E-4	4	22	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS50158	8.911	7	22	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	14.238	94	150	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-17	96	151	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-17	97	148	IPR006447	Myb domain, plants
SMART	SM00717	4.3E-9	98	148	IPR001005	SANT/Myb domain
Pfam	PF00249	2.6E-10	101	145	IPR001005	SANT/Myb domain
CDD	cd00167	6.22E-9	101	145	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.1E-11	101	145	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MNGSRTCSLC GNNGHNSRTC PEGDVGGFML FGVRVTTEGS NSFRKSXXXX XXXXXKSVSM 60 NNLSQYEQPQ SQDSNNADAG YASDDVVHPS DRGGGRKRGI PWTEEEHRLF LLGLQKVGKG 120 DWRGISRNFV KTRTSTQVAS HAQKYFLRRN NFNRRRRRSS LFDITTHTFT SSSTEDDLIF 180 SGHEVMPLPL PPSQPQKDTL PGNFPVKIYP AKPPPAAVAG GAVDSNAVEG TLTPSSSNYQ 240 AKTCSSRISR PIPMLPLSPY PKLAELNINE RTPEDPLPLT LKLSTPHSEE QSPAAASQSS 300 GSFQTMSGGG DSIDIVSVA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00630	PBM	Transfer from PK17526.1	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681896	1e-119	LN681896.1 Cucumis melo genomic scaffold, anchoredscaffold00016.
GenBank	LN713264	1e-119	LN713264.1 Cucumis melo genomic chromosome, chr_10.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004135214.1	1e-170	PREDICTED: transcription factor MYB1R1
Swissprot	Q9LVS0	3e-50	KUA1_ARATH; Transcription factor KUA1
TrEMBL	A0A0A0KQE3	1e-169	A0A0A0KQE3_CUCSA; Uncharacterized protein
STRING	XP_004155335.1	1e-170	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5338	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G70000.2	2e-59	MYB_related family protein

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]