PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009694
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family Trihelix
Protein Properties Length: 304aa    MW: 34211.2 Da    PI: 6.8099
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009694genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix54.72.6e-1724114186
   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                +W+++ + +Li++  ++  +l+rg+l++++W++v++++     ++++ +r+ +qCk++++ ++k+yk +k++ +  +  +ss++p++d+l+
  Cla009694  24 CWSEEATSTLIDVWGRRFVELNRGNLRQKDWQDVAEAVnalhgHSKKTHRTDVQCKNRIDTIKKKYKIEKARVSASNGSVSSSWPFYDRLD 114
                7******************************************9****************************999999999********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-2622115No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGDLTDSLTP SSGHSRPMPV REDCWSEEAT STLIDVWGRR FVELNRGNLR QKDWQDVAEA  60
VNALHGHSKK THRTDVQCKN RIDTIKKKYK IEKARVSASN GSVSSSWPFY DRLDVLIGSN  120
FSQKKPSTSM SQSPPMVRPL AYRKAPSSGT ASAVSVAIPQ KRPLAVVDEG YFRRNYSAIA  180
AAAAATEAEE EEEEEEEEAE AEAEERGSED EEGEGEGMSR LAKAIERFGK MYERVEAEKL  240
RQMVELEKQR MQFAKDLEVQ RMQMFTETQV QLERIKRGKK SGSNGSSRLS SKVSRGEHNW  300
PGHP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-46AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022925760.11e-170trihelix transcription factor ASIL2-like isoform X2
TrEMBLA0A1J7IIT11e-127A0A1J7IIT1_LUPAN; Uncharacterized protein
STRINGXP_004171548.11e-126(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.16e-57sequence-specific DNA binding transcription factors