PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla009439
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family NAC
Protein Properties Length: 202aa    MW: 23208 Da    PI: 4.6888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla009439genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.77e-34111311128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 
                lppGfrF Ptdeelvv++L++k++  +++  +vi+++++++++Pw+L+ k+ +e ++wyf+s++           r+t++gyW+  g+d +vls+ ++e+
  Cla009439  11 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLNLFTYDPWELEGKALGEGNRWYFYSRKID--------VRVTDNGYWNPLGRDDPVLSTaTSEV 101
                79*************************999.99**************977778899******9866........599****************9978899 PP

        NAM 100 vglkktLvfykgrapkge.ktdWvmheyrl 128
                vg+kk + f+ ++a  g  kt+W+mheyrl
  Cla009439 102 VGMKKYFLFHVQDAAAGPlKTNWIMHEYRL 131
                **********765555544*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-457165IPR003441NAC domain
PROSITE profilePS5100543.77711166IPR003441NAC domain
PfamPF023651.1E-2112131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MAAADSQNFN LPPGFRFYPT DEELVVHFLH RKAALLPCHP DVIPDLNLFT YDPWELEGKA  60
LGEGNRWYFY SRKIDVRVTD NGYWNPLGRD DPVLSTATSE VVGMKKYFLF HVQDAAAGPL  120
KTNWIMHEYR LADTAAAAAS SSSSSRRRGR PKRDYSKWVL CRVYERDEEK EEEEDGAELS  180
CLDEVFLTLD DLDEISLPNR IQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-34817217174NAC domain-containing protein 19
3swm_B1e-34817217174NAC domain-containing protein 19
3swm_C1e-34817217174NAC domain-containing protein 19
3swm_D1e-34817217174NAC domain-containing protein 19
3swp_A1e-34817217174NAC domain-containing protein 19
3swp_B1e-34817217174NAC domain-containing protein 19
3swp_C1e-34817217174NAC domain-containing protein 19
3swp_D1e-34817217174NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146153RRGRPKRD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817922e-92LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132552e-92LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008455246.11e-117PREDICTED: NAC domain-containing protein 104
SwissprotQ8GWK66e-83NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A1S3C0L61e-116A0A1S3C0L6_CUCME; NAC domain-containing protein 104
STRINGXP_008455246.11e-117(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-76xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]